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Report for CCDS23705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23705.1 Public Mus musculus 10 Vta1 23 108 98 CCDS HistoryNCBI Gene:66201Re-query CCDS DB by CCDS ID:23705.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154132.7 ENSMUSP00000119829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154132.7Link to Ensembl Protein Viewer:ENSMUSP00000119829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154132Re-query CCDS DB by Protein ID:ENSMUSP00000119829
Original member NCBI NM_025418.3 NP_079694.2 Updated not alive Link to Nucleotide Sequence:NM_025418.3Link to Protein Sequence:NP_079694.2Re-query CCDS DB by Nucleotide ID:NM_025418Re-query CCDS DB by Protein ID:NP_079694
Current member NCBI NM_025418.4 NP_079694.2 Accepted alive Link to Nucleotide Sequence:NM_025418.4Link to Protein Sequence:NP_079694.2Re-query CCDS DB by Nucleotide ID:NM_025418Re-query CCDS DB by Protein ID:NP_079694Link to BLAST:NP_079694.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079694.2 309 Q9CR26 309 100% 0 0

Chromosomal Locations for CCDS 23705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 14655700 14655845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14661066 14661152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14667932 14668108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14675934 14676042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14684064 14684139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14684881 14685008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14687614 14687708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14705350 14705461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGCCGCGCTGGCCCCTCTGCCGCCGCTGCCCGCGCAGTTTAAGAGCATACAGCACCATTTGAGAACGG
CGCAGGAGCATGACAAGCGGGACCCCGTGGTGGCCTACTACTGTCGTTTATATGCTATGCAAACTGGAAT
GAAGATTGATAGTAAAACTCCTGAGTGTCGTAAATTTTTATCAAAGCTAATGGATCAGTTAGAAGCTCTT
AAAAAACAGTTGGGGGATAATGAAGCTGTTACTCAAGAAATAGTTGGTTGTGCCCATTTGGAAAATTATG
CTTTGAAAATGTTCTTGTATGCAGACAATGAAGATCGAGCTGGACGATTTCACAAAAACATGATCAAGTC
CTTCTACACTGCCAGCCTTTTAATAGATGTCATCACAGTGTTTGGTGAACTCACAGATGAAAATGTGAAA
CATAGAAAGTATGCAAGGTGGAAGGCAACATATATTCATAACTGCTTAAAGAATGGGGAGACTCCTCAAG
CAGGCCCTGTTGGAATAGAGGAAGAGAATGATGTTGAAGAAAATGAAGATGTTGGCGCAACCTCTCTGCC
CACTCAGCCACCTCAGCCATCATCATCTTCAGCATACGACCCAAGCAACTTGGCACCAGGCAGCTACAGT
GGCATACAGATTCCTCCAGGTGCACATGCTCCAGCTAATACCCCTGCAGAAGTGCCACACAGCACAGGTG
TAACGAGTAATGCCGTCCAGCCTAGTCCACAGACTGTCCCAGCTGCTCCAGCTGTTGATCCTGACCTGTA
CACAGCTTCCCAGGGGGATATCCGCCTGACCCCGGAGGACTTCGCTAGAGCTCAGAAGTACTGCAAGTAT
GCTGGCAGTGCCCTGCAGTATGAAGATGTGGGCACCGCTGTGCAGAACCTCCAGAAGGCCCTCAGGCTGC
TGACCACAGGCAGGGAGTGA

Translation (309 aa):
MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEAL
KKQLGDNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVK
HRKYARWKATYIHNCLKNGETPQAGPVGIEEENDVEENEDVGATSLPTQPPQPSSSSAYDPSNLAPGSYS
GIQIPPGAHAPANTPAEVPHSTGVTSNAVQPSPQTVPAAPAVDPDLYTASQGDIRLTPEDFARAQKYCKY
AGSALQYEDVGTAVQNLQKALRLLTTGRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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