NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7453.1 Public Homo sapiens 10 SLIT1 24 110 108 CCDS HistoryNCBI Gene:6585Re-query CCDS DB by CCDS ID:7453.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266058.9 ENSP00000266058.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266058.9Link to Ensembl Protein Viewer:ENSP00000266058.4Re-query CCDS DB by Nucleotide ID:ENST00000266058Re-query CCDS DB by Protein ID:ENSP00000266058
Original member Current member NCBI NM_003061.3 NP_003052.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003061.3Link to Protein Sequence:NP_003052.2Re-query CCDS DB by Nucleotide ID:NM_003061Re-query CCDS DB by Protein ID:NP_003052Link to BLAST:NP_003052.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003052.2 1534 O75093-1 1534 100% 0 0

Chromosomal Locations for CCDS 7453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 97001112 97001350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97002158 97002369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97002704 97002992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97004068 97004222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97004693 97004823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97006483 97006720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97010993 97011130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97013741 97013834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97014019 97014158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97018586 97018683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97018983 97019107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97021250 97021413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97030757 97030828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97031606 97031677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97034471 97034542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97037698 97037766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97039988 97040120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97042901 97043067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97043370 97043513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97046654 97046797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97046991 97047065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97047690 97047834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97047973 97047996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97048955 97049118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97056321 97056464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97057210 97057281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97059460 97059531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97060087 97060158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97060640 97060787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97063455 97063618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97064168 97064239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97064805 97064876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97066015 97066086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97157818 97157889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97163380 97163451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97164819 97164890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97185478 97185674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4605 nt):
ATGGCGCTGACTCCCGGGTGGGGGTCCTCGGCGGGGCCGGTCCGGCCGGAGCTCTGGCTGCTGCTGTGGG
CAGCCGCGTGGCGCCTGGGTGCCTCGGCGTGCCCCGCCCTCTGCACCTGCACCGGAACCACGGTGGACTG
CCACGGCACGGGGCTGCAGGCCATTCCCAAGAATATACCTCGGAACACCGAGCGCCTGGAACTCAATGGC
AACAACATCACTCGGATCCATAAGAATGACTTTGCGGGGCTCAAGCAGCTGCGGGTGCTGCAGCTGATGG
AGAACCAGATTGGAGCAGTGGAACGTGGTGCTTTTGATGACATGAAGGAGCTGGAGCGGCTGCGACTGAA
CCGAAACCAGCTGCACATGTTACCGGAACTGCTGTTCCAGAACAACCAGGCTTTGTCAAGACTGGACTTG
AGTGAGAACGCCATCCAGGCCATCCCCAGGAAAGCTTTTCGGGGAGCTACGGACCTTAAAAATTTACAGC
TGGACAAGAACCAGATCAGCTGCATTGAGGAAGGGGCCTTCCGTGCTCTGCGGGGGCTGGAGGTGCTGAC
CCTGAACAACAACAATATCACCACCATCCCCGTGTCCAGCTTCAACCATATGCCCAAGCTACGGACCTTC
CGCCTGCACTCCAACCACCTGTTTTGCGACTGCCACCTGGCCTGGCTCTCGCAGTGGCTGAGGCAGCGGC
CAACCATCGGGCTCTTCACCCAGTGCTCGGGCCCAGCCAGCCTGCGTGGCCTCAATGTGGCAGAGGTCCA
GAAGAGTGAGTTCAGCTGCTCAGGCCAGGGAGAAGCGGGGCGCGTGCCCACCTGCACCCTGTCCTCCGGC
TCCTGCCCGGCCATGTGCACCTGCAGCAATGGCATCGTGGACTGTCGTGGAAAAGGCCTCACTGCCATCC
CGGCCAACCTGCCCGAGACCATGACGGAGATACGCCTGGAGCTGAACGGCATCAAGTCCATCCCTCCTGG
AGCCTTCTCACCCTACAGAAAGCTACGGAGGATAGACCTGAGCAACAATCAGATCGCTGAGATTGCACCC
GACGCCTTCCAGGGCCTCCGCTCCCTGAACTCGCTGGTCCTCTATGGAAACAAGATCACAGACCTCCCCC
GTGGTGTGTTTGGAGGCCTATACACCCTACAGCTCCTGCTCCTGAATGCCAACAAGATCAACTGCATCCG
GCCCGATGCCTTCCAGGACCTGCAGAACCTCTCACTGCTCTCCCTGTATGACAACAAGATCCAGAGCCTC
GCCAAGGGCACTTTCACCTCCCTGCGGGCCATCCAGACTCTGCACCTGGCGCAGAACCCTTTCATTTGCG
ACTGTAACCTCAAGTGGCTGGCAGACTTCCTGCGCACCAATCCCATCGAGACGAGTGGTGCCCGCTGTGC
CAGTCCCCGGCGCCTCGCCAACAAGCGCATCGGGCAGATCAAGAGCAAGAAGTTCCGGTGCTCAGCCAAA
GAGCAGTACTTCATTCCAGGCACGGAGGATTACCAGCTGAACAGCGAGTGCAACAGCGACGTGGTCTGTC
CCCACAAGTGCCGCTGTGAGGCCAACGTGGTGGAGTGCTCCAGCCTGAAGCTCACCAAGATCCCTGAGCG
CATCCCCCAGTCCACGGCAGAACTGCGATTGAATAACAATGAGATTTCCATCCTGGAGGCCACTGGGATG
TTTAAAAAACTTACACATCTGAAGAAAATCAATCTGAGCAACAACAAGGTGTCAGAAATTGAAGATGGGG
CCTTCGAGGGCGCAGCCTCTGTGAGCGAGCTGCACCTAACTGCCAACCAGCTGGAGTCCATCCGGAGCGG
CATGTTCCGGGGTCTGGATGGCTTGAGGACCCTAATGCTGCGGAACAACCGCATCAGCTGCATCCACAAC
GACAGCTTCACGGGCCTGCGCAACGTCCGGCTCCTCTCGCTCTACGACAACCAGATCACCACCGTATCCC
CAGGAGCCTTCGACACCCTCCAGTCCCTCTCCACACTGAATCTCCTGGCCAACCCTTTCAACTGCAACTG
CCAGCTGGCCTGGCTAGGAGGCTGGCTACGGAAGCGCAAGATCGTGACGGGGAACCCGCGATGCCAGAAC
CCTGACTTTTTGCGGCAGATTCCCCTGCAGGACGTGGCCTTCCCTGACTTCAGGTGTGAGGAAGGCCAGG
AGGAGGGGGGCTGCCTGCCCCGCCCACAGTGCCCACAGGAGTGCGCCTGCCTGGACACCGTGGTCCGATG
CAGCAACAAGCACCTGCGGGCCCTGCCCAAGGGCATTCCCAAGAATGTCACAGAACTCTATTTGGACGGG
AACCAGTTCACGCTGGTTCCGGGACAGCTGTCTACCTTCAAGTACCTGCAGCTCGTGGACCTGAGCAACA
ACAAGATCAGTTCCTTAAGCAATTCCTCCTTCACCAACATGAGCCAGCTGACCACTCTGATCCTCAGCTA
CAATGCCCTGCAGTGCATCCCGCCTTTGGCCTTCCAGGGACTCCGCTCCCTGCGCCTGCTGTCTCTCCAC
GGCAATGACATCTCCACCCTCCAAGAGGGCATCTTTGCAGACGTGACCTCCCTGTCTCACCTGGCCATTG
GTGCCAACCCCCTATACTGTGACTGCCACCTCCGCTGGCTGTCCAGCTGGGTGAAGACTGGCTACAAGGA
ACCGGGCATTGCTCGTTGTGCTGGGCCCCAGGACATGGAGGGCAAGCTGCTCCTCACCACGCCTGCCAAG
AAGTTTGAATGCCAAGGTCCTCCAACGCTGGCTGTCCAGGCCAAGTGTGATCTCTGCTTGTCCAGTCCGT
GCCAGAACCAGGGCACCTGCCACAACGACCCCCTTGAGGTGTACAGGTGCGCCTGCCCCAGCGGCTATAA
GGGTCGAGACTGTGAGGTGTCCCTGGACAGCTGTTCCAGTGGCCCCTGTGAAAATGGGGGCACCTGCCAT
GCACAGGAGGGCGAGGATGCCCCGTTCACGTGCTCCTGTCCCACCGGCTTTGAAGGACCAACCTGTGGGG
TGAACACAGATGACTGTGTGGATCATGCCTGTGCCAATGGGGGCGTCTGTGTGGATGGTGTGGGCAACTA
CACCTGCCAGTGCCCCCTGCAGTATGAGGGAAAGGCCTGTGAGCAGCTGGTGGACTTGTGCTCTCCGGAT
CTGAACCCATGTCAACACGAGGCCCAGTGTGTGGGCACCCCGGATGGGCCCAGGTGTGAGTGCATGCCAG
GTTATGCAGGTGACAACTGCAGTGAGAACCAGGATGACTGCAGGGACCACCGCTGCCAGAATGGGGCCCA
GTGTATGGATGAAGTCAACAGCTACTCCTGCCTCTGTGCTGAGGGCTACAGTGGACAGCTCTGTGAGATC
CCTCCCCATCTGCCTGCCCCCAAGAGCCCCTGTGAGGGGACTGAGTGCCAGAATGGGGCCAACTGTGTGG
ACCAGGGCAACAGGCCTGTGTGCCAGTGCCTCCCAGGCTTCGGTGGCCCTGAGTGTGAGAAGTTGCTCAG
TGTCAACTTTGTGGATCGGGACACTTACCTGCAGTTCACTGACCTGCAAAACTGGCCACGGGCCAACATC
ACGTTGCAGGTCTCCACGGCAGAGGACAATGGGATCCTTCTGTACAACGGGGACAACGACCACATTGCAG
TTGAGCTGTACCAGGGCCATGTGCGTGTCAGCTACGACCCAGGCAGCTACCCCAGCTCTGCCATCTACAG
TGCTGAGACGATCAACGATGGGCAATTCCACACCGTTGAGCTGGTTGCCTTTGACCAGATGGTGAATCTC
TCCATTGATGGCGGGAGCCCCATGACCATGGACAACTTTGGCAAACATTACACGCTCAACAGCGAGGCGC
CACTCTATGTGGGAGGGATGCCCGTGGATGTCAACTCAGCTGCCTTCCGCCTGTGGCAGATCCTCAACGG
CACCGGCTTCCACGGTTGCATCCGAAACCTGTACATCAACAACGAGCTGCAGGACTTCACCAAGACGCAG
ATGAAGCCAGGCGTGGTGCCAGGCTGCGAACCCTGCCGCAAGCTCTACTGCCTGCATGGCATCTGCCAGC
CCAATGCCACCCCAGGGCCCATGTGCCACTGCGAGGCTGGCTGGGTGGGCCTGCACTGTGACCAGCCCGC
TGACGGCCCCTGCCATGGCCACAAGTGTGTCCATGGGCAATGCGTGCCCCTCGACGCTCTTTCCTACAGC
TGCCAGTGCCAGGATGGGTACTCGGGGGCACTGTGCAACCAGGCCGGGGCCCTGGCAGAGCCCTGCAGAG
GCCTGCAGTGCCTGCATGGCCACTGCCAGGCCTCAGGCACCAAGGGGGCACACTGTGTGTGTGACCCCGG
CTTTTCGGGCGAGCTGTGTGAGCAAGAGTCCGAGTGCCGGGGGGACCCTGTCCGGGACTTTCACCAGGTC
CAGAGGGGCTATGCCATCTGCCAGACCACGCGCCCCCTGTCATGGGTGGAGTGCCGGGGCTCGTGCCCAG
GCCAGGGCTGCTGCCAGGGCCTTCGGCTGAAGCGGAGGAAGTTCACCTTTGAGTGCAGCGATGGGACCTC
TTTTGCCGAGGAGGTGGAAAAGCCCACCAAGTGTGGCTGTGCCCTCTGCGCATAG

Translation (1534 aa):
MALTPGWGSSAGPVRPELWLLLWAAAWRLGASACPALCTCTGTTVDCHGTGLQAIPKNIPRNTERLELNG
NNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDL
SENAIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSSFNHMPKLRTF
RLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSEFSCSGQGEAGRVPTCTLSSG
SCPAMCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAP
DAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSL
AKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLANKRIGQIKSKKFRCSAK
EQYFIPGTEDYQLNSECNSDVVCPHKCRCEANVVECSSLKLTKIPERIPQSTAELRLNNNEISILEATGM
FKKLTHLKKINLSNNKVSEIEDGAFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHN
DSFTGLRNVRLLSLYDNQITTVSPGAFDTLQSLSTLNLLANPFNCNCQLAWLGGWLRKRKIVTGNPRCQN
PDFLRQIPLQDVAFPDFRCEEGQEEGGCLPRPQCPQECACLDTVVRCSNKHLRALPKGIPKNVTELYLDG
NQFTLVPGQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLH
GNDISTLQEGIFADVTSLSHLAIGANPLYCDCHLRWLSSWVKTGYKEPGIARCAGPQDMEGKLLLTTPAK
KFECQGPPTLAVQAKCDLCLSSPCQNQGTCHNDPLEVYRCACPSGYKGRDCEVSLDSCSSGPCENGGTCH
AQEGEDAPFTCSCPTGFEGPTCGVNTDDCVDHACANGGVCVDGVGNYTCQCPLQYEGKACEQLVDLCSPD
LNPCQHEAQCVGTPDGPRCECMPGYAGDNCSENQDDCRDHRCQNGAQCMDEVNSYSCLCAEGYSGQLCEI
PPHLPAPKSPCEGTECQNGANCVDQGNRPVCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPRANI
TLQVSTAEDNGILLYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGQFHTVELVAFDQMVNL
SIDGGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTGFHGCIRNLYINNELQDFTKTQ
MKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGWVGLHCDQPADGPCHGHKCVHGQCVPLDALSYS
CQCQDGYSGALCNQAGALAEPCRGLQCLHGHCQASGTKGAHCVCDPGFSGELCEQESECRGDPVRDFHQV
QRGYAICQTTRPLSWVECRGSCPGQGCCQGLRLKRRKFTFECSDGTSFAEEVEKPTKCGCALCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH