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Report for CCDS47241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47241.1 Public Homo sapiens 5 RPS23 24 110 108 CCDS HistoryNCBI Gene:6228Re-query CCDS DB by CCDS ID:47241.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296674.13 ENSP00000296674.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296674.13Link to Ensembl Protein Viewer:ENSP00000296674.8Re-query CCDS DB by Nucleotide ID:ENST00000296674Re-query CCDS DB by Protein ID:ENSP00000296674
Original member Current member EBI ENST00000651545.1 ENSP00000498621.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651545.1Link to Ensembl Protein Viewer:ENSP00000498621.1Re-query CCDS DB by Nucleotide ID:ENST00000651545Re-query CCDS DB by Protein ID:ENSP00000498621
Original member Current member NCBI NM_001025.5 NP_001016.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001025.5Link to Protein Sequence:NP_001016.1Re-query CCDS DB by Nucleotide ID:NM_001025Re-query CCDS DB by Protein ID:NP_001016Link to BLAST:NP_001016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001016.1 143 P62266 143 100% 0 0

Chromosomal Locations for CCDS 47241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 82276109 82276255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 82276398 82276518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 82277693 82277852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 82278320 82278323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGGCAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGTCACCGACGAGACCAGAAGTGGCATG
ATAAACAGTATAAGAAAGCTCATTTGGGCACAGCCCTAAAGGCCAACCCTTTTGGAGGTGCTTCTCATGC
AAAAGGAATCGTGCTGGAAAAAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATTAGGAAGTGTGTA
AGGGTCCAGCTGATCAAGAATGGCAAGAAAATCACAGCCTTTGTACCCAATGACGGTTGCTTGAACTTTA
TTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCGCAAAGGTCATGCTGTTGGTGATATTCCTGG
AGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTTTCTCTTTTGGCCCTATACAAAGGCAAGAAGGAAAGA
CCAAGATCATAA

Translation (143 aa):
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV
RVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKER
PRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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