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Report for CCDS29972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29972.1 Public Mus musculus X Ccdc120 23 108 98 CCDS HistoryNCBI Gene:54648Re-query CCDS DB by CCDS ID:29972.1Re-query CCDS DB by GeneID:54648See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033490.12 ENSMUSP00000033490.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033490.12Link to Ensembl Protein Viewer:ENSMUSP00000033490.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033490Re-query CCDS DB by Protein ID:ENSMUSP00000033490
Original member Current member NCBI NM_207202.2 NP_997085.2 Accepted alive Link to Nucleotide Sequence:NM_207202.2Link to Protein Sequence:NP_997085.2Re-query CCDS DB by Nucleotide ID:NM_207202Re-query CCDS DB by Protein ID:NP_997085Link to BLAST:NP_997085.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997085.2 629 A2AEV7 629 100% 0 0

Chromosomal Locations for CCDS 29972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7733156 7734098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7735072 7735170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7735301 7735475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7735774 7735836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7736692 7736977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7737299 7737439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7737894 7738027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7738162 7738210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGGAAGTCAAAGGTCAGCTGATCAGTTCTCCTACCTTCACGGCCCCAGCTGCCCTGTTTGGAGAGGCTG
CCCCACTGGTGAAGTCAGACCGTCTTCGAGGGCTGCTTGACCGCCAGCGAGCCTTGCAAGAGGCCCTGAG
CGTAAAACTTCAAGAGCTCAGGAAAGTGTGTCTGCAGGAGGCGGAGCTAACTGGTCAGCTGCCCCCTGAG
TGCCCACTGGAGCCTGGTGAACGACCTCAGTTGGTCCGCCGGAGGCCCCCTGCAGCACGTGCCTACCCTC
CACCACACCCAAACCCAGCACACCACTCCTTGTGTCCTGCTGAGGAACTGGCTCTTGAGGCCTTGGAGAG
GGAGGTATCGGTGCAGCAGCAGATTGCAGCTGCTGCCCGCCGCCTGGCCCTGGCCCCTGACCTCAACGGA
GAACAGAGGCGGCGCAGGCGCCAGGTACAGGTTGATGCACTTCGAAGGCTGCACGAGCTGGAGGAGCAGC
TCAGGGACTTCCGGGCCCGTCTTGGCCTCCCGGTGCTCCAGCCACTGCCACTGTCTGCAGGAGCACTAGT
CAATGCCCAGGGTGTCTGCCTGGGTACACGCCTTGCTCAGCTCAGCCAAGAGGATGTAGTTCTGCACTCG
GAGAGCAGCTCCCTCTCAGAGTCAGGGGCCAGCCATGATAACGAGGAGCCTCATAGCTGCTTCCCTCTAA
CGGAGCGCCCCTCACCACCAAAAGCGTGGGACCAGTTTCGGGCAGTATCTGGGGGGAGCCCTGAGCGACG
AGCCCCATGGAAACCTCCACCATCAGATATTTATGGGGACCTGAAGAGCCGACGCAACTCTGTGGCCAGC
CCCACCAGCCCCACACGCTCGCTGCCCAGGAGTGCCTCCAGTTTTGAGGGGCGAAGTGTGCCTGCTACCC
CTGTCCTCACCCGGGGCAGTGGCCCCCGGCTCTGCAAACCGGAAGGCCTCCATTCTCGCCAGTGGTCCGG
TAGTCAGGACTCCCAGATGGGCTTTCCTCGGCCTGACCCTGCTTCGGATCGGGCCTCCCTCTTCGCAGCT
CGTACCCGCCGCAGCAATAGCTCTGAGGCCCTGCTGGTGGACCGCGCAGCTGCTGGCGGAGCTGGATCTC
CACCTGCCCCGCTGGCTCCCCCTGCTGCTGGTCCCCCAGTTTGCAAGAGCAGTGAGGTGCTGTATGAGCG
CCCGCAACCAGTCCCTTCCTTCTCTTCCCGTACCACTGGCCCCCCAGACCCTCCTCGGGCTGCCAGGCCT
AGCTCAGCTGCCCCTGCATCCCGTGGCGCCCCCCGGCTCCCAACTGTGTGTGGAGACTTCCTCTTGGACT
ATCCATTGGACCGAGGCTTGCCCCGCGGTAGTGGCGGGGCAGGTTGGGGGGAGCTGCTGCCTGCTCCTGA
GGTCCCAGGACCCCTTTCCCGCAGAGATGGGCTCCTTGCCATGCTCCCAGGTCCTCCACCCATATATGCA
GCTGATGGCAGCAGCCCCCTCCTCCGCAGCAAGGACCCCAACACCCGTGCCATCCGTTCCAAGCCCAGTG
GCTTACCCCCAGAAGCTGTGGAGGGTCTGGAAGTGCATCCAAATCCATTACTCTGGATGCCCCCACCCAC
TCGGATACCTCCAGCTGGAGAGCGAGGTGGCCACAAGAACCTTGCCTTGGAGGGGCTGCGGGACTGGTAC
ATCCGGAACTCGGGACTGGCAGTTGGTCCCCAGCGCAGGCCAATGCTCCCGCACGTGGGGCCAACACACA
CCCCCTTCCTCCATGCCCGCTGCTATGAGGTGGGCCAGTCACTCTATGGCCCTCCCAGCCAGGCACCGCT
CCCGCACTCCAGGAGTTTTACAGCGCCCCCTGTCTCTGGCAGGTATGGGGGTGCTTTTACTGATGGGTAG

Translation (629 aa):
MEVKGQLISSPTFTAPAALFGEAAPLVKSDRLRGLLDRQRALQEALSVKLQELRKVCLQEAELTGQLPPE
CPLEPGERPQLVRRRPPAARAYPPPHPNPAHHSLCPAEELALEALEREVSVQQQIAAAARRLALAPDLNG
EQRRRRRQVQVDALRRLHELEEQLRDFRARLGLPVLQPLPLSAGALVNAQGVCLGTRLAQLSQEDVVLHS
ESSSLSESGASHDNEEPHSCFPLTERPSPPKAWDQFRAVSGGSPERRAPWKPPPSDIYGDLKSRRNSVAS
PTSPTRSLPRSASSFEGRSVPATPVLTRGSGPRLCKPEGLHSRQWSGSQDSQMGFPRPDPASDRASLFAA
RTRRSNSSEALLVDRAAAGGAGSPPAPLAPPAAGPPVCKSSEVLYERPQPVPSFSSRTTGPPDPPRAARP
SSAAPASRGAPRLPTVCGDFLLDYPLDRGLPRGSGGAGWGELLPAPEVPGPLSRRDGLLAMLPGPPPIYA
ADGSSPLLRSKDPNTRAIRSKPSGLPPEAVEGLEVHPNPLLWMPPPTRIPPAGERGGHKNLALEGLRDWY
IRNSGLAVGPQRRPMLPHVGPTHTPFLHARCYEVGQSLYGPPSQAPLPHSRSFTAPPVSGRYGGAFTDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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