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Report for CCDS72442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72442.1 Public Mus musculus X Rtl9 23 108 98 CCDS HistoryNCBI Gene:209540Re-query CCDS DB by CCDS ID:72442.1Re-query CCDS DB by GeneID:209540See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165829.2 ENSMUSP00000128287.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165829.2Link to Ensembl Protein Viewer:ENSMUSP00000128287.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165829Re-query CCDS DB by Protein ID:ENSMUSP00000128287
Original member Current member NCBI NM_001040434.2 NP_001035524.2 Accepted alive Link to Nucleotide Sequence:NM_001040434.2Link to Protein Sequence:NP_001035524.2Re-query CCDS DB by Nucleotide ID:NM_001040434Re-query CCDS DB by Protein ID:NP_001035524Link to BLAST:NP_001035524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035524.2 1367 Q32KG4-2 1367 100% 0 0

Chromosomal Locations for CCDS 72442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 143099594 143103580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 143104181 143104297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4104 nt):
ATGGCAGATATGTCAATACCATTACATTCACTACGCTTCAACAATATGATGAAGGAGGAAAATGGTGACC
CTCAAAACAGAGGGGCAACTTTCTCTAGACCAATGACAGAGACCAGAGCAGAAGTTCAAATCCTGCATTC
ACAGTTGCAGTTGCCTGTTGTTTCGACTTCAGCCTCAGATCTCGAAGGGACATCTACACAGCTGATGACA
TCGCCAGGCTTTGACAGTCTGTCCACACCTCTCATGGGAGCACCACACTCTGGGACGTTGTCCCCACCAC
TGATGTCAGCCTCAGACTCTGGGACACTGTCCCCACTGCTAATGCCGGCCTCAGATTCGGGAACACTATC
CCCACTCCTAATGCCAGTTTCAGACTCTGGAACACTGTCTCCACTGCTAATGCCAGCCTCAGATTCAGGA
ACACTGTCCCCACTGTTGTCTACTTCAGACTATGGGTTAATGTCCCCAGGGATGATGTCAATACCTGATT
TTGGGACAATGTCATCACTAATGGCAGCCCCAGATTCTGCAGAGATATCACCATTGGCAATGCCAATTCA
GTCCTCTGGAGTGATATCTGCACCTATAATGAGCACTTCATCCTCCGAGGCATCGTTAATGCTAGGATCA
GATCCTGGTGAGATATCCCCACTCCTGATTCCAGATATGAACCCTGGAGTGACATCCACACCACCAATGA
CAGCTCCAGGCTCAGAAGCAATGTCCCCACTGCAAATTACAGATGAGGACACAGAAGCAATGTCCAAAGT
GCTAATGACGGCTCTAGCTTCTGGAGAGATATCATCACTGCTAATGTCAGGCACAGACTCTGAAGCGATA
TCTTCTCTGATCATGTCAGCTCTAGCTTCTGGGGAAACACCAGCCCAGCCAACAAATCCTCCAGAGTCTG
AAGGGATACCCACTGTGCTCATGTCAGGCTCAGACTCTGCAGTCATGTCTTCACTGCCTATGCCAGTTTC
TGGCTCTGGAGCAATGCCTACACCACTCCTGTCAATCCCAGATGCTGGAGAAATAGCCACATTACCAAAG
CCAGTCCCAGATGTTGAGGCAATGTCCCCACTGTTAATGACAGCCCTCACCTCTACAGTGATGCCCAGTC
AACTGATTTCAGCATCTAGTTCTGGAGTGATGTCCCCAGATACAACACAAAATATCAACTCTGAGGTCAT
GTCTGCTCCACCAATAAGAGTTTCATCCACTGGATTGATGTCCACACTACCTGTGAGAGCTTCTGATACA
GCGGCAACACCCATACAGCTAATGAGAGTCCCTGCCTCTGGAAATATGTCTACATCACAAAAGACAGTTC
CAGTCTCTGGATCAATGTCCACTCCACTGATGGCTGTCACAAGCCCTGGAGCAATATTCACAGAACAAAT
GCCAAGCACAGCCTCTGGTACAATGTCTACACATTTAACAATGCCCCAAACACCTGGAACAATGCCCATA
GGTTTTATGAAGTCCACATCAAATGGAGCCGTTTCTGCACAGCAAATTAGATGTTCAGTTTCTGGGATGA
TGTCCACACAGCCAGTTATAGCTACAGCCTCTGAAATAATGTCTGTGTCACAATCAACAGTCCCAACCTC
TGGGTCAGTGTCCACACAGAAAACCCGAGCTCCTGTCTCTGGACCAATGTCTACAACCCAAATAAGAACC
ACAGCCTCAGCGTTGACATCTACACCACAAATGAGAGCCACAGCCTCCGGGACAATGTCTATCCCACTGA
TGACAGCCAAAACCTCTGGATCAGCATCCACACTGTTAATGAGAGACACAGCCTCAGGAGTGATATCCGT
GCCACAGATGAGAGCTCCAGGCTCTGGAACAGTGTCCAAGCCACTAATGACATCCAAAGCTTCTGGAATG
TTCATGCAGCAAATGACAACTGCAGCTTTTGGAGCAACGCCTACATCGCTAATGAGAGACACAGCTTCTG
GAGGTCTGTCCATGCCACAGATGACAGATCCAGCCTCAGGAGGCATGTCCACACTGCTAACAAGAGCCAC
AGCTTCTGGAACAAAGTCTACATCACAGATGACAGCCACCACCTCTGGAGGCATTTTCATGCCTCAAACA
AGACTCTCAGGTCCTGGAGCAACATCCACACCACTAATGAGAGCCACAGCCTCTGAGAAGATGCCTAGTC
AGGCAATGAACATTCAAGACTCTGGAGGAGTGTCCACACCGCTCATGAGACCTGTTGCCTTGGGAGGGGT
GCAAATGAGATCCCAGGGCTCTGGAACAATGTCCACACCCCTATTGAGAGCCTCGGACTCATCAGAGATG
AGTATGTTGCTCACAAAAGCCCCATCCTCTGGAGAGCGGCCTCTGCTATTAGTGAGACCTCCAGCTTCAG
GAGAGATAGCTCCACATTCGAGAACCCCAGTTTATGGGACAATATCTGCTCCACACATGACGACCACAGC
CTCAGGAGTGATGACCATGTCACCTATGAAGACTTCTGTTCCTGTATCAGAGTCGGCAACTCTCCTGAGA
CCCACAGATTCAGGAGTGATGTCCATACCACTGACGAGAACACCAGCTTCTAGAGCAAAGTCCAGACCAC
AAATGGCCACAGCTTGTGGAGACATGTGTCCACTCCCAGTGCGAGCTCCAGCCACTGCAGGGATCTCTCC
ATCACCAGTCAGATCACCAGCCTCTTCCACCTTGTCTACACTACTTAGGAGACCCTCTGATGGAGCTGTG
ACTGCAGAGTTAGAGAGAGTTCTAGGCCCTGCACAATTTGCAGCTATGACCCCGGGAGAGATGTCCAAGC
CACTGATGAGGGCTTCAGCCCCTGGAACCACAACCATGCCTTTGATGTCCCCCATGACTTCTGGAGAGAT
GTCTATGCCACTAATGAAAACCACGCCCTCTGGGACAATGTCAACTCTACAAACCAAAGTCATGAGCTCT
AGAGCTACATCCTTACCACAGCCAAGAAATGCAGCTTCTGGGGTAATAGCTAACCCCCCACAGAGAGCCC
CAGCCTCTGGAGCAGGGTCTACACCACTTATGAGAGTCTCAGGTTCAGGAATGATGTCCACGCCACTATT
GGGGGCTACAGCTTCAGGAGGAATGTCCATGCCACAAATGGCACCTCCAACCTCTGGAGATATGTTCTCA
CCACTAATGAGGTCCCCGGCACCTGGAATAATGTCCACACCACAAACGGCCTTTGGAATGACACCCACTC
TGAACGTCAAAGCCACAGATTCGGGAGAGGCATCTACCTCTCACACCAGATTCACAGCCCCTGGCTCAAA
GAGCACACCACACATGACCAGCACAGCCCCTGAAATGAAGACCCCCCCACCAAAGGAAGTGCCGTCCTTT
GGTATGTTGACCCCAGCACTCTGTTACCTCTTAGAAGAGCAAGAAGCAGCCCGGGGCTCATCCTCTGTGG
AGGAAGATGCAGAGGAGATTGATGAGGAGAAACAAATGAAGGGGTTTTTAGATGATTCTGAGAAAATGGC
ATTTCTGGTGTCTCTTCATCTGGGGGCAGCAGAGAGGTGGTCCATCTTGCAAATGGAGGTAGGAAATCCC
ATCTCCAGTGATAATAAAGCTTTCTTGAGAAGATCACAGGGCTTATATGACTCCCTATCTGAGATAGACA
TCCTAAGTGCTGTTCTTTGCCATCCCAAGCAGGGCAAAAAGTCAGTAAGGCAGTATGCCACTGACTTCCT
GCTGTTGGCCCGACATTTGTCTTGGTCTGATGCCATTCTACGGACCAGGTTTCTGGAAGGACTCTCAGAA
GCTGTTACCACCAAAATGGGCCGTATCTTCCTGAAGGTGGCCGGCAGCCTAAAGGAGCTGATAGATAGGT
CTCTGTATACTGAGTGCCAGCTGGCTGAAGAGAAGGATTCTTCAGGCAACTCAAACCAAGTTGTGCCAAC
ATCCTGTAAGCGGAACAATGAGGAGGCCATGGAGAATGAACTGGGCTCTCAGCAGCAGACTGAGGAGCAC
CAGCATGTTCCCAAACGCTGTTACTACTTGAAAGAACATGGAGACCCCCAGGAAAGTCTTCATGACCACC
TTCGACAGAGTGCAGGCCTTCCGAAGGCCCCTACAAACAAGTAG

Translation (1367 aa):
MADMSIPLHSLRFNNMMKEENGDPQNRGATFSRPMTETRAEVQILHSQLQLPVVSTSASDLEGTSTQLMT
SPGFDSLSTPLMGAPHSGTLSPPLMSASDSGTLSPLLMPASDSGTLSPLLMPVSDSGTLSPLLMPASDSG
TLSPLLSTSDYGLMSPGMMSIPDFGTMSSLMAAPDSAEISPLAMPIQSSGVISAPIMSTSSSEASLMLGS
DPGEISPLLIPDMNPGVTSTPPMTAPGSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAI
SSLIMSALASGETPAQPTNPPESEGIPTVLMSGSDSAVMSSLPMPVSGSGAMPTPLLSIPDAGEIATLPK
PVPDVEAMSPLLMTALTSTVMPSQLISASSSGVMSPDTTQNINSEVMSAPPIRVSSTGLMSTLPVRASDT
AATPIQLMRVPASGNMSTSQKTVPVSGSMSTPLMAVTSPGAIFTEQMPSTASGTMSTHLTMPQTPGTMPI
GFMKSTSNGAVSAQQIRCSVSGMMSTQPVIATASEIMSVSQSTVPTSGSVSTQKTRAPVSGPMSTTQIRT
TASALTSTPQMRATASGTMSIPLMTAKTSGSASTLLMRDTASGVISVPQMRAPGSGTVSKPLMTSKASGM
FMQQMTTAAFGATPTSLMRDTASGGLSMPQMTDPASGGMSTLLTRATASGTKSTSQMTATTSGGIFMPQT
RLSGPGATSTPLMRATASEKMPSQAMNIQDSGGVSTPLMRPVALGGVQMRSQGSGTMSTPLLRASDSSEM
SMLLTKAPSSGERPLLLVRPPASGEIAPHSRTPVYGTISAPHMTTTASGVMTMSPMKTSVPVSESATLLR
PTDSGVMSIPLTRTPASRAKSRPQMATACGDMCPLPVRAPATAGISPSPVRSPASSTLSTLLRRPSDGAV
TAELERVLGPAQFAAMTPGEMSKPLMRASAPGTTTMPLMSPMTSGEMSMPLMKTTPSGTMSTLQTKVMSS
RATSLPQPRNAASGVIANPPQRAPASGAGSTPLMRVSGSGMMSTPLLGATASGGMSMPQMAPPTSGDMFS
PLMRSPAPGIMSTPQTAFGMTPTLNVKATDSGEASTSHTRFTAPGSKSTPHMTSTAPEMKTPPPKEVPSF
GMLTPALCYLLEEQEAARGSSSVEEDAEEIDEEKQMKGFLDDSEKMAFLVSLHLGAAERWSILQMEVGNP
ISSDNKAFLRRSQGLYDSLSEIDILSAVLCHPKQGKKSVRQYATDFLLLARHLSWSDAILRTRFLEGLSE
AVTTKMGRIFLKVAGSLKELIDRSLYTECQLAEEKDSSGNSNQVVPTSCKRNNEEAMENELGSQQQTEEH
QHVPKRCYYLKEHGDPQESLHDHLRQSAGLPKAPTNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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