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Report for CCDS23160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23160.1 Public Mus musculus 9 Htr3b 23 108 98 CCDS HistoryNCBI Gene:57014Re-query CCDS DB by CCDS ID:23160.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008734.4 ENSMUSP00000008734.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008734.4Link to Ensembl Protein Viewer:ENSMUSP00000008734.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000008734Re-query CCDS DB by Protein ID:ENSMUSP00000008734
Original member Current member NCBI NM_020274.4 NP_064670.1 Accepted alive Link to Nucleotide Sequence:NM_020274.4Link to Protein Sequence:NP_064670.1Re-query CCDS DB by Nucleotide ID:NM_020274Re-query CCDS DB by Protein ID:NP_064670Link to BLAST:NP_064670.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064670.1 437 Q9JHJ5 437 100% 0 0

Chromosomal Locations for CCDS 23160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 48935900 48936135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48936754 48936936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48937049 48937259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48945493 48945650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48946415 48946584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48947222 48947331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48947591 48947635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48959201 48959361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 48964746 48964785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGATTCTTCTGTGGTCCTGCCTCCTGGTGGCTGTAGTAGGTATCCTAGGTACAGCGACACCTCAGCCTG
GGAATTCTTCTCTGCACCGTCTCACCAGGCAGCTCTTACAACAGTACCACAAGGAGGTCAGACCAGTTTA
CAACTGGGCTGAGGCCACCACTGTCTACCTGGACCTTTGCGTCCATGCTGTATTGGATGTGGATGTGCAG
AATCAAAAATTAAAGACAAGCGTGTGGTACCGAGAGGTTTGGAACGATGAGTTTTTGTCCTGGAACTCTA
GTCTGTTCGATGAGATTCAAGAGATCTCTCTCCCTCTCAGTGCCCTCTGGGCCCCTGATATCATCATTAA
TGAGTTTGTGGATGTTGAAAGATCTCCTGACCTGCCCTATGTATACGTGAACTCTTCTGGCACCATTAGA
AACCACAAGCCCATCCAGGTGGTCTCCGCATGCAGTTTGCAGACATATGCTTTCCCCTTTGATATCCAGA
ACTGCAGCCTCACCTTTAATAGCATTCTGCACACAGTGGAAGACATAGACCTGGGCTTCCTGAGGAATAG
AGAAGACATCGAGAATGACAAAAGGGCTTTTATGAATGACAGTGAGTGGCAGCTTCTTTCTGTGTCCTCT
ACTTACCACATCCGGCAGAGCAGCGCTGGAGACTTCGCACAGATTCGGTTCAACGTAGTGATCCGCAGAT
GTCCATTGGCCTACGTTGTGAGCCTCTTGATACCTAGCATCTTCCTGATGCTCGTGGACCTGGGAAGCTT
CTACTTGCCCCCCAACTGCCGTGCAAGAATTGTGTTCAAGACCAATGTGCTGGTGGGCTATACGGTCTTC
AGGGTCAACATGTCTGATGAAGTGCCAAGAAGTGCAGGGTGCACACCTCTGATTGGGGTCTTCTTTACCG
TCTGCATGGCCCTCTTGGTTCTCAGTTTATCCAAATCCATCTTGCTGATCAAATTCCTCTATGAGGAGCG
GCACAGTGGGCAAGAACGGCCTCTTATGTGCCTTCAAGGCGACTCTGATGCCGAGGAGTCTAGATTGTAC
CTCGGGGCTCCACGTGCTGACGTCACAGAGTCCCCGGTCCATCAGGAGCATCGGGTCCCATCAGATACTC
TGAAGGATTTCTGGTTCCAGTTCCGGTCCATCAACAACTCTCTTCGAACTCGGGATCAGATTCACCAGAA
GGAGGTGGAGTGGCTGGCCATCCTGTATCGCTTTGATCAGCTGCTCTTCCGAATCTACCTTGCCGTGCTG
GGGCTCTATACCGTCACCTTATGCTCTCTCTGGGCACTGTGGAGCAGAATGTGA

Translation (437 aa):
MILLWSCLLVAVVGILGTATPQPGNSSLHRLTRQLLQQYHKEVRPVYNWAEATTVYLDLCVHAVLDVDVQ
NQKLKTSVWYREVWNDEFLSWNSSLFDEIQEISLPLSALWAPDIIINEFVDVERSPDLPYVYVNSSGTIR
NHKPIQVVSACSLQTYAFPFDIQNCSLTFNSILHTVEDIDLGFLRNREDIENDKRAFMNDSEWQLLSVSS
TYHIRQSSAGDFAQIRFNVVIRRCPLAYVVSLLIPSIFLMLVDLGSFYLPPNCRARIVFKTNVLVGYTVF
RVNMSDEVPRSAGCTPLIGVFFTVCMALLVLSLSKSILLIKFLYEERHSGQERPLMCLQGDSDAEESRLY
LGAPRADVTESPVHQEHRVPSDTLKDFWFQFRSINNSLRTRDQIHQKEVEWLAILYRFDQLLFRIYLAVL
GLYTVTLCSLWALWSRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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