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Report for CCDS53270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53270.1 Public Homo sapiens 1 PDPN 24 110 108 CCDS HistoryNCBI Gene:10630Re-query CCDS DB by CCDS ID:53270.1Re-query CCDS DB by GeneID:10630See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000475043.5 ENSP00000426063.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000475043.5Link to Ensembl Protein Viewer:ENSP00000426063.1Re-query CCDS DB by Nucleotide ID:ENST00000475043Re-query CCDS DB by Protein ID:ENSP00000426063
Original member Current member NCBI NM_001006625.2 NP_001006626.1 Accepted alive Link to Nucleotide Sequence:NM_001006625.2Link to Protein Sequence:NP_001006626.1Re-query CCDS DB by Nucleotide ID:NM_001006625Re-query CCDS DB by Protein ID:NP_001006626Link to BLAST:NP_001006626.1
Original member Current member NCBI NM_001385053.1 NP_001371982.1 Accepted alive Link to Nucleotide Sequence:NM_001385053.1Link to Protein Sequence:NP_001371982.1Re-query CCDS DB by Nucleotide ID:NM_001385053Re-query CCDS DB by Protein ID:NP_001371982Link to BLAST:NP_001371982.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006626.1 118 Q86YL7-5 118 100% 0 0
NP_001371982.1 118 Q86YL7-5 118 100% 0 0

Chromosomal Locations for CCDS 53270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13607232 13607306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13610387 13610516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13613687 13613725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13614300 13614405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13615905 13615911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGCCAGGTGCCGAAGATGATGTGGTGACTCCAGGAACCAGCGAAGACCGCTATAAGTCTGGCTTGACAA
CTCTGGTGGCAACAAGTGTCAACAGTGTAACAGGCATTCGCATCGAGGATCTGCCAACTTCAGAAAGCAC
AGTCCACGCGCAAGAACAAAGTCCAAGCGCCACAGCCTCAAACGTGGCCACCAGTCACTCCACGGAGAAA
GTGGATGGAGACACACAGACAACAGTTGAGAAAGATGGTTTGTCAACAGTGACCCTGGTTGGAATCATAG
TTGGGGTCTTACTAGCCATCGGCTTCATTGGTGCAATCATCGTTGTGGTTATGCGAAAAATGTCGGGAAG
GCCCTAA

Translation (118 aa):
MPGAEDDVVTPGTSEDRYKSGLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEK
VDGDTQTTVEKDGLSTVTLVGIIVGVLLAIGFIGAIIVVVMRKMSGRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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