NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS201.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
201.1 Public Homo sapiens 1 PLA2G2A 24 110 108 CCDS HistoryNCBI Gene:5320Re-query CCDS DB by CCDS ID:201.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 201.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375111.7 ENSP00000364252.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375111.7Link to Ensembl Protein Viewer:ENSP00000364252.3Re-query CCDS DB by Nucleotide ID:ENST00000375111Re-query CCDS DB by Protein ID:ENSP00000364252
Original member Current member EBI ENST00000400520.8 ENSP00000383364.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400520.8Link to Ensembl Protein Viewer:ENSP00000383364.3Re-query CCDS DB by Nucleotide ID:ENST00000400520Re-query CCDS DB by Protein ID:ENSP00000383364
Original member Current member EBI ENST00000482011.3 ENSP00000504762.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000482011.3Link to Ensembl Protein Viewer:ENSP00000504762.1Re-query CCDS DB by Nucleotide ID:ENST00000482011Re-query CCDS DB by Protein ID:ENSP00000504762
Original member Current member NCBI NM_000300.4 NP_000291.1 Accepted alive Link to Nucleotide Sequence:NM_000300.4Link to Protein Sequence:NP_000291.1Re-query CCDS DB by Nucleotide ID:NM_000300Re-query CCDS DB by Protein ID:NP_000291Link to BLAST:NP_000291.1
Original member Current member NCBI NM_001161727.2 NP_001155199.1 Accepted alive Link to Nucleotide Sequence:NM_001161727.2Link to Protein Sequence:NP_001155199.1Re-query CCDS DB by Nucleotide ID:NM_001161727Re-query CCDS DB by Protein ID:NP_001155199Link to BLAST:NP_001155199.1
Original member Current member NCBI NM_001161728.2 NP_001155200.1 Accepted alive Link to Nucleotide Sequence:NM_001161728.2Link to Protein Sequence:NP_001155200.1Re-query CCDS DB by Nucleotide ID:NM_001161728Re-query CCDS DB by Protein ID:NP_001155200Link to BLAST:NP_001155200.1
Original member Current member NCBI NM_001161729.1 NP_001155201.1 Accepted alive Link to Nucleotide Sequence:NM_001161729.1Link to Protein Sequence:NP_001155201.1Re-query CCDS DB by Nucleotide ID:NM_001161729Re-query CCDS DB by Protein ID:NP_001155201Link to BLAST:NP_001155201.1
Original member Current member NCBI NM_001395463.1 NP_001382392.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001395463.1Link to Protein Sequence:NP_001382392.1Re-query CCDS DB by Nucleotide ID:NM_001395463Re-query CCDS DB by Protein ID:NP_001382392Link to BLAST:NP_001382392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000291.1 144 P14555 144 100% 0 0
NP_001155199.1 144 P14555 144 100% 0 0
NP_001155200.1 144 P14555 144 100% 0 0
NP_001155201.1 144 P14555 144 100% 0 0
NP_001382392.1 144 P14555 144 100% 0 0

Chromosomal Locations for CCDS 201.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19975701 19975843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19978015 19978121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19978380 19978524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19978734 19978773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGAAGACCCTCCTACTGTTGGCAGTGATCATGATCTTTGGCCTACTGCAGGCCCATGGGAATTTGGTGA
ATTTCCACAGAATGATCAAGTTGACGACAGGAAAGGAAGCCGCACTCAGTTATGGCTTCTACGGCTGCCA
CTGTGGCGTGGGTGGCAGAGGATCCCCCAAGGATGCAACGGATCGCTGCTGTGTCACTCATGACTGTTGC
TACAAACGTCTGGAGAAACGTGGATGTGGCACCAAATTTCTGAGCTACAAGTTTAGCAACTCGGGGAGCA
GAATCACCTGTGCAAAACAGGACTCCTGCAGAAGTCAACTGTGTGAGTGTGATAAGGCTGCTGCCACCTG
TTTTGCTAGAAACAAGACGACCTACAATAAAAAGTACCAGTACTATTCCAATAAACACTGCAGAGGGAGC
ACCCCTCGTTGCTGA

Translation (144 aa):
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCC
YKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGS
TPRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH