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Report for CCDS34139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34139.1 Public Homo sapiens 5 ZFR 24 110 108 CCDS HistoryNCBI Gene:51663Re-query CCDS DB by CCDS ID:34139.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34139.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265069.13 ENSP00000265069.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265069.13Link to Ensembl Protein Viewer:ENSP00000265069.8Re-query CCDS DB by Nucleotide ID:ENST00000265069Re-query CCDS DB by Protein ID:ENSP00000265069
Original member Current member NCBI NM_016107.5 NP_057191.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016107.5Link to Protein Sequence:NP_057191.2Re-query CCDS DB by Nucleotide ID:NM_016107Re-query CCDS DB by Protein ID:NP_057191Link to BLAST:NP_057191.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057191.2 1074 Q96KR1 1074 100% 0 0

Chromosomal Locations for CCDS 34139.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 32355760 32355939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32363948 32364045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32364164 32364275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32379115 32379210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32380075 32380172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32385508 32385649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32387549 32387699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32388469 32388674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32390275 32390437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32395159 32395304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32397219 32397338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32400007 32400203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32403106 32403397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32403906 32404097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32406774 32407021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32414969 32415187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32417648 32417792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32419821 32420103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32444229 32444328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32444622 32444658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGATTCCCATATGCCCTGTAGTTTCTTTCACCTATGTGCCCAGCCGGCTGGGGGAAGATGCCAAAATGG
CGACCGGCAACTACTTTGGATTCACCCACAGCGGGGCGGCGGCGGCGGCGGCTGCGGCCCAATATAGCCA
GCAGCCAGCTTCGGGTGTAGCCTATTCTCATCCAACTACAGTTGCTAGCTACACTGTCCATCAGGCTCCA
GTAGCTGCTCACACAGTTACTGCTGCCTATGCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTC
CAGTAGCTGTTGCAGCTGCTGCAACAGCTGCTGCTTATGGAGGCTACCCCACTGCACACACAGCAACTGA
CTATGGTTATACTCAGAGGCAACAAGAAGCACCACCACCACCACCCCCAGCTACTACACAAAACTACCAG
GATTCATACTCATATGTAAGGTCCACAGCTCCTGCTGTAGCTTATGATAGTAAGCAATACTACCAACAAC
CAACAGCAACTGCTGCTGCTGTAGCTGCCGCTGCCCAACCTCAGCCTTCTGTTGCTGAAACTTACTATCA
GACAGCCCCCAAAGCAGGTTACAGCCAAGGTGCAACTCAGTATACTCAAGCCCAGCAAACTCGACAAGTG
ACAGCCATAAAACCAGCCACACCAAGTCCAGCTACCACTACTTTCTCCATCTATCCTGTATCCTCCACCG
TACAGCCAGTAGCAGCTGCGGCTACTGTGGTGCCATCCTATACTCAGAGTGCTACTTACAGTACCACAGC
AGTTACATATTCTGGTACGTCTTATTCAGGTTATGAAGCAGCAGTGTATTCAGCTGCATCTTCCTACTAT
CAACAGCAGCAGCAGCAACAGAAGCAGGCAGCAGCAGCAGCTGCTGCTGCTGCTGCAACAGCTGCCTGGA
CAGGGACCACCTTTACTAAAAAAGCACCATTCCAAAATAAACAACTGAAACCAAAACAGCCTCCCAAACC
ACCACAGATTCACTATTGTGATGTTTGTAAGATCAGCTGTGCTGGACCACAGACTTATAAAGAACATTTA
GAAGGACAGAAACATAAAAAAAAAGAAGCTGCATTGAAAGCCTCACAAAATACCAGCAGCAGCAACAGTT
CTACTCGTGGGACTCAAAATCAGCTACGTTGTGAGCTCTGCGATGTGTCTTGTACAGGAGCAGATGCGTA
TGCTGCCCACATTCGTGGTGCTAAGCATCAGAAAGTGGTTAAGTTACACACAAAACTTGGTAAACCCATT
CCATCAACAGAACCAAATGTTGTTAGCCAAGCTACTTCTTCAACAGCTGTATCTGCTTCAAAGCCGACTG
CCTCTCCTTCAAGCATTGCAGCAAACAATTGTACTGTGAATACGTCATCAGTTGCAACGTCTTCAATGAA
GGGTCTTACGACTACAGGAAACTCGTCTCTTAATAGCACATCTAACACTAAAGTATCAGCAGTGCCTACA
AATATGGCTGCCAAGAAAACATCTACCCCCAAAATAAATTTTGTTGGTGGTAATAAGCTGCAGTCAACAG
GAAATAAAGCAGAAGACATAAAAGGAACCGAATGTGTTAAAAGTACTCCTGTCACTTCTGCTGTGCAGAT
TCCTGAAGTAAAGCAAGACACAGTGTCAGAACCAGTCACACCTGCATCTCTTGCTGCTTTACAGAGTGAT
GTGCAGCCAGTGGGCCATGATTATGTGGAAGAGGTACGAAATGATGAAGGAAAAGTAATTCGGTTCCATT
GTAAATTATGCGAGTGCAGCTTTAATGATCCCAATGCTAAGGAGATGCACTTAAAAGGGCGAAGACACAG
ACTTCAATATAAAAAAAAAGTAAATCCAGATTTGCAAGTAGAAGTAAAGCCTAGTATTCGAGCAAGAAAG
ATTCAAGAAGAGAAAATGAGGAAGCAAATGCAGAAGGAGGAGTACTGGCGAAGACGAGAAGAAGAGGAGC
GTTGGAGAATGGAAATGAGACGTTATGAAGAGGACATGTACTGGAGGAGAATGGAGGAAGAACAACATCA
TTGGGATGATCGCCGCCGAATGCCAGATGGAGGTTATCCTCATGGTCCTCCAGGCCCATTAGGCCTTCTG
GGAGTCCGACCAGGCATGCCTCCTCAGCCTCAGGGGCCTGCACCCTTACGTCGTCCTGACTCATCTGATG
ACCGTTATGTAATGACAAAACATGCCACCATTTATCCAACTGAAGAGGAGTTACAGGCAGTTCAGAAAAT
TGTTTCTATTACTGAACGTGCTTTAAAACTCGTTTCAGACAGTTTGTCTGAACATGAGAAGAACAAGAAC
AAAGAGGGAGATGATAAGAAAGAGGGAGGTAAAGACAGAGCTTTGAAAGGAGTTTTGCGAGTGGGAGTAT
TGGCAAAAGGATTACTTCTCCGAGGAGATAGAAATGTCAACCTTGTTTTGCTGTGCTCAGAGAAACCTTC
AAAGACATTATTAAGCCGTATTGCAGAAAACCTACCCAAACAGCTTGCTGTTATAAGCCCTGAGAAGTAT
GACATAAAATGTGCTGTATCTGAAGCGGCAATAATTTTGAATTCATGTGTGGAACCCAAAATGCAAGTCA
CTATCACACTGACATCTCCAATTATTCGAGAAGAGAACATGAGGGAAGGAGATGTAACCTCGGGTATGGT
GAAAGACCCACCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAG
TGGTTCCAGGCTAGAGCTAATGGTCTGCAGTCCTGTGTGATTATCATACGCATTCTTCGAGACCTCTGTC
AGCGAGTTCCAACTTGGTCTGATTTTCCAAGCTGGGCTATGGAGTTACTAGTAGAGAAAGCAATCAGCAG
TGCTTCTAGCCCTCAGAGCCCTGGGGATGCACTGAGAAGAGTTTTTGAATGCATTTCTTCAGGGATTATT
CTTAAAGGTAGTCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACCTTGGCAACAATGACTG
ACCAGCAGCGTGAAGACATCACATCCAGTGCACAGTTTGCATTGAGACTCCTTGCATTCCGCCAGATACA
CAAAGTTCTAGGCATGGATCCATTACCGCAAATGAGCCAACGTTTTAACATCCACAACAACAGGAAACGA
AGAAGAGATAGTGATGGAGTTGATGGATTTGAAGCTGAGGGGAAAAAAGACAAAAAAGATTATGATAACT
TTTAA

Translation (1074 aa):
MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASYTVHQAP
VAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQ
DSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQAQQTRQV
TAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYSGTSYSGYEAAVYSAASSYY
QQQQQQQKQAAAAAAAAAATAAWTGTTFTKKAPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHL
EGQKHKKKEAALKASQNTSSSNSSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPI
PSTEPNVVSQATSSTAVSASKPTASPSSIAANNCTVNTSSVATSSMKGLTTTGNSSLNSTSNTKVSAVPT
NMAAKKTSTPKINFVGGNKLQSTGNKAEDIKGTECVKSTPVTSAVQIPEVKQDTVSEPVTPASLAALQSD
VQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARK
IQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLL
GVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKNKN
KEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAENLPKQLAVISPEKY
DIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAK
WFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGII
LKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMSQRFNIHNNRKR
RRDSDGVDGFEAEGKKDKKDYDNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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