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Report for CCDS18153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18153.1 Public Mus musculus 4 Trim14 23 108 98 CCDS HistoryNCBI Gene:74735Re-query CCDS DB by CCDS ID:18153.1Re-query CCDS DB by GeneID:74735See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046897.12 ENSMUSP00000038719.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046897.12Link to Ensembl Protein Viewer:ENSMUSP00000038719.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046897Re-query CCDS DB by Protein ID:ENSMUSP00000038719
Original member Current member NCBI NM_029077.4 NP_083353.1 Accepted alive Link to Nucleotide Sequence:NM_029077.4Link to Protein Sequence:NP_083353.1Re-query CCDS DB by Nucleotide ID:NM_029077Re-query CCDS DB by Protein ID:NP_083353Link to BLAST:NP_083353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083353.1 440 Q8BVW3-1 440 100% 0 0

Chromosomal Locations for CCDS 18153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46506892 46507427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46510437 46510529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46521982 46522144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46523506 46523739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46533015 46533110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46535880 46536080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGGCGAGCGAGACTACCGAGGCGCGGGCGCCCTTTCAGCCCGACGGGGCGTATGGCTGGCGCTGTCCGG
AGCACAGCGAACGCCCGGCTGAGCTCTTCTGTCGCCGCTGCGGCCGCTGTGTGTGCGCGCTCTGCCCGGT
TCTGGGTGCGCACCGCGGCCACCCGGTGGGCCTGGCCGAGGAGGAGGCTGTGCGTGTGCAGAAGCTAATC
CAGGACTGTTTAGAGTGTTTGGCAACCAAGAAGAGGCAACATGCGGACAACATAGCCCATTTGGAAGACG
CCGGGGAAAGGCTCAAGGTTTACGCAGACTCAAGTAAAGCCTGGCTGACACAGAAATTCACAGAACTCAG
ATTACTCCTGGATGAAGAGGAAGTACTGGCCAAAAAATTCATTGACAAAAGCACACAGCTCACCCTCCAG
GTGTACCGGGAGCAAGCCGAGACTTGTGGGAAGCAGATTGAGGTCATGGATGACTTCTCTACCAGGGTGT
GGGGCATTGGCCAGGAGCCCAACCCTGTTCAGCTGCTGCAGGCATATATAGCCACCAAGACAGAGATGGG
ACAGCAGATGAGCCCCTCGGAGCTGAGCCACCCTGTGCCCCTGTCCTTCGAGCCTGTCAAGAACTTCTTT
AAGGAGTTTGTGGAAGCCATCGGGAACACGTTGCAGACACCAATGGACACTCGCCTGAAGGAAAACATAA
ACTGCCAGCTTTCAAACTCCTCCAGCACCAAGCCAGGCGCCTTGTTGAAAACCAGCCCCTCGCCAGAGAG
AGCTCTCTTCTTGAAATACGCCCGTACGCCAACGCTGGACCCGGACACGATGCACGCGCGCCTGCGCCTG
TCGCCGGACGGTCTGACAGTCCGCTGCTCGCTGCTGGGTCGCCTGGGGCCGCGTCCCGCGCCGCGGTTCG
ACGCGCTGCGGCAGGTGCTGGGCCGCGACGGCTTCGCAGCCGGACGCCACTACTGGGAGGTGGACGTGCA
GGAGGCCGGTGTGGGCTGGTGGGTGGGCGCGGCGTACCCGTCGCTGCGCCGCCGCGGAGCCTCCGCCGCC
GCCCGCCTGGGCTGCAACCGCGAGTCGTGGTGCGTAAAGCGTTACGACCTAGAGTACTGGGCCTTCCATG
ACGGCCAGCGAAGTCGCCTGCGGCCCCGCCGCGACCCCCACCGGCTCGGCGTCTTCCTGGACTACGAGGC
CGGCATTCTGGCCTTCTACGACGTGGCGGGTGGCATGAGCCACTTGCACACCTTCCACGCCGCCTTCCAG
GAGCCGCTCTATCCAGCCCTGCGCCTCTGGGAGGGGCCCATCAGCATCCCTAGGTTGCCCTAA

Translation (440 aa):
MASETTEARAPFQPDGAYGWRCPEHSERPAELFCRRCGRCVCALCPVLGAHRGHPVGLAEEEAVRVQKLI
QDCLECLATKKRQHADNIAHLEDAGERLKVYADSSKAWLTQKFTELRLLLDEEEVLAKKFIDKSTQLTLQ
VYREQAETCGKQIEVMDDFSTRVWGIGQEPNPVQLLQAYIATKTEMGQQMSPSELSHPVPLSFEPVKNFF
KEFVEAIGNTLQTPMDTRLKENINCQLSNSSSTKPGALLKTSPSPERALFLKYARTPTLDPDTMHARLRL
SPDGLTVRCSLLGRLGPRPAPRFDALRQVLGRDGFAAGRHYWEVDVQEAGVGWWVGAAYPSLRRRGASAA
ARLGCNRESWCVKRYDLEYWAFHDGQRSRLRPRRDPHRLGVFLDYEAGILAFYDVAGGMSHLHTFHAAFQ
EPLYPALRLWEGPISIPRLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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