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Report for CCDS8890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8890.1 Public Homo sapiens 12 CD63 24 110 108 CCDS HistoryNCBI Gene:967Re-query CCDS DB by CCDS ID:8890.1Re-query CCDS DB by GeneID:967See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8890.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257857.9 ENSP00000257857.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257857.9Link to Ensembl Protein Viewer:ENSP00000257857.4Re-query CCDS DB by Nucleotide ID:ENST00000257857Re-query CCDS DB by Protein ID:ENSP00000257857
Original member Current member EBI ENST00000420846.7 ENSP00000393502.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420846.7Link to Ensembl Protein Viewer:ENSP00000393502.3Re-query CCDS DB by Nucleotide ID:ENST00000420846Re-query CCDS DB by Protein ID:ENSP00000393502
Original member Current member EBI ENST00000549117.5 ENSP00000447730.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549117.5Link to Ensembl Protein Viewer:ENSP00000447730.1Re-query CCDS DB by Nucleotide ID:ENST00000549117Re-query CCDS DB by Protein ID:ENSP00000447730
Original member Current member EBI ENST00000552692.5 ENSP00000449337.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552692.5Link to Ensembl Protein Viewer:ENSP00000449337.1Re-query CCDS DB by Nucleotide ID:ENST00000552692Re-query CCDS DB by Protein ID:ENSP00000449337
Original member Current member NCBI NM_001257389.2 NP_001244318.1 Accepted alive Link to Nucleotide Sequence:NM_001257389.2Link to Protein Sequence:NP_001244318.1Re-query CCDS DB by Nucleotide ID:NM_001257389Re-query CCDS DB by Protein ID:NP_001244318Link to BLAST:NP_001244318.1
Original member Current member NCBI NM_001257390.2 NP_001244319.1 Accepted alive Link to Nucleotide Sequence:NM_001257390.2Link to Protein Sequence:NP_001244319.1Re-query CCDS DB by Nucleotide ID:NM_001257390Re-query CCDS DB by Protein ID:NP_001244319Link to BLAST:NP_001244319.1
Original member Current member NCBI NM_001257391.2 NP_001244320.1 Accepted alive Link to Nucleotide Sequence:NM_001257391.2Link to Protein Sequence:NP_001244320.1Re-query CCDS DB by Nucleotide ID:NM_001257391Re-query CCDS DB by Protein ID:NP_001244320Link to BLAST:NP_001244320.1
Original member Current member NCBI NM_001267698.2 NP_001254627.1 Accepted alive Link to Nucleotide Sequence:NM_001267698.2Link to Protein Sequence:NP_001254627.1Re-query CCDS DB by Nucleotide ID:NM_001267698Re-query CCDS DB by Protein ID:NP_001254627Link to BLAST:NP_001254627.1
Original member Current member NCBI NM_001780.6 NP_001771.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001780.6Link to Protein Sequence:NP_001771.1Re-query CCDS DB by Nucleotide ID:NM_001780Re-query CCDS DB by Protein ID:NP_001771Link to BLAST:NP_001771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244318.1 238 P08962-1 238 100% 0 0
NP_001244319.1 238 P08962-1 238 100% 0 0
NP_001244320.1 238 P08962-1 238 100% 0 0
NP_001254627.1 238 P08962-1 238 100% 0 0
NP_001771.1 238 P08962-1 238 100% 0 0

Chromosomal Locations for CCDS 8890.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55725561 55725626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55725813 55725896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55726121 55726261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55726700 55726795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55726890 55726964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55727151 55727339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55728276 55728341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCGGTGGAAGGAGGAATGAAATGTGTGAAGTTCTTGCTCTACGTCCTCCTGCTGGCCTTTTGCGCCT
GTGCAGTGGGACTGATTGCCGTGGGTGTCGGGGCACAGCTTGTCCTGAGTCAGACCATAATCCAGGGGGC
TACCCCTGGCTCTCTGTTGCCAGTGGTCATCATCGCAGTGGGTGTCTTCCTCTTCCTGGTGGCTTTTGTG
GGCTGCTGCGGGGCCTGCAAGGAGAACTATTGTCTTATGATCACGTTTGCCATCTTTCTGTCTCTTATCA
TGTTGGTGGAGGTGGCCGCAGCCATTGCTGGCTATGTGTTTAGAGATAAGGTGATGTCAGAGTTTAATAA
CAACTTCCGGCAGCAGATGGAGAATTACCCGAAAAACAACCACACTGCTTCGATCCTGGACAGGATGCAG
GCAGATTTTAAGTGCTGTGGGGCTGCTAACTACACAGATTGGGAGAAAATCCCTTCCATGTCGAAGAACC
GAGTCCCCGACTCCTGCTGCATTAATGTTACTGTGGGCTGTGGGATTAATTTCAACGAGAAGGCGATCCA
TAAGGAGGGCTGTGTGGAGAAGATTGGGGGCTGGCTGAGGAAAAATGTGCTGGTGGTAGCTGCAGCAGCC
CTTGGAATTGCTTTTGTCGAGGTTTTGGGAATTGTCTTTGCCTGCTGCCTCGTGAAGAGTATCAGAAGTG
GCTACGAGGTGATGTAG

Translation (238 aa):
MAVEGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVAFV
GCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTASILDRMQ
ADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAA
LGIAFVEVLGIVFACCLVKSIRSGYEVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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