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Report for CCDS18390.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18390.2 Public Mus musculus 4 Ube2u 23 108 98 CCDS HistoryNCBI Gene:381534Re-query CCDS DB by CCDS ID:18390.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18390.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. The use of an alternative upstream would result in a protein that is 113 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18390.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133493.8 ENSMUSP00000137472.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133493.8Link to Ensembl Protein Viewer:ENSMUSP00000137472.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133493Re-query CCDS DB by Protein ID:ENSMUSP00000137472
Original member Current member NCBI NM_001033773.4 NP_001028945.2 Accepted alive Link to Nucleotide Sequence:NM_001033773.4Link to Protein Sequence:NP_001028945.2Re-query CCDS DB by Nucleotide ID:NM_001033773Re-query CCDS DB by Protein ID:NP_001028945Link to BLAST:NP_001028945.2

Chromosomal Locations for CCDS 18390.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 100479182 100479247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100481606 100481687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100482782 100482874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100486647 100486744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100490095 100490215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100514681 100514729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100524255 100524343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100532102 100532183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100547175 100547272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 100549722 100550002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGTACTCCAAAGCTTACATCTTGCTGGAAAGAGAATTCAGGGAGTTAAAACGTGACACAAGAAAGGATA
TTACTGCTTATCCTGTAAGTGATGATATGATGAATTGGAAAGCTGAGATTGAAGGTCTTCGCAATTCAGT
TTGTGAAGGACTTGTTTTCTACCTGACATTAGAGTTTTCACAAGAGTACAATTCTGTTCCTCCAAATGTG
AAATTTACAACAATTCCTTTTCATCCAAATGTAGACCCATATACCGGTAAACCCAGTATAGACTTTTTGG
ACAAGCCTGGCAAGTGGAACACGAATTATACAGTACTCAGCATCTTACTTGATCTACAGATGTTGCTTTC
TTACCCTGTCCTAAAAAATCCAGTGAACTTGGAGGCAGCCCAACTGCTGATTAGAAATGCGTCTACGTAT
AAAATGGTAATTCAGGAACTTTTGCCGCCAGCATTACCAAAAAGAGAGAGCAGCCTGGTGATACCTGAAA
AGCCACAGGATCGAGTCAGGGTAATTAAAACAATCTCATTTAATGATTACTACAAGACATGGTCTCAGAT
AGCCACGACAAAAGTCGCAGAACACTCCAGAAACCCATTTGTTGGAGATCCACATTTCATGGGACAGTAT
TACAAATGGAAGCAACAGGATCGGCAGAATCAAGTGCAATGGGAGTCCAAGTTTGCACTCTCAAAGTGGC
AGACTGCTAGGAAAAAAATAATGGCTCAGGAAAAGAGCAATCACTACAACCAAGTGATAGGTATCTACCC
ATCTCCGAGTGAACTTTCTTTTGAATATGAAATAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAG
GAGGAGGAGGAGGAAGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAACCAAGGATTTATCAAATAC
CTCAGGAGTGGCCAGAAGAACATGATTCAAAAGAATCCTGGGAAGAGGAAGCAGACCACCTGGTCTCCTG
GACCAATGGTCTTGATGAAGAATCTTTGAACTATGAGTACTTTGACAACGTAAAGAACTATGAGAACTTG
GGCAACTAA

Translation (352 aa):
MYSKAYILLEREFRELKRDTRKDITAYPVSDDMMNWKAEIEGLRNSVCEGLVFYLTLEFSQEYNSVPPNV
KFTTIPFHPNVDPYTGKPSIDFLDKPGKWNTNYTVLSILLDLQMLLSYPVLKNPVNLEAAQLLIRNASTY
KMVIQELLPPALPKRESSLVIPEKPQDRVRVIKTISFNDYYKTWSQIATTKVAEHSRNPFVGDPHFMGQY
YKWKQQDRQNQVQWESKFALSKWQTARKKIMAQEKSNHYNQVIGIYPSPSELSFEYEIEEEEEEEEEEEE
EEEEEEEEEEKEEEEEEPRIYQIPQEWPEEHDSKESWEEEADHLVSWTNGLDEESLNYEYFDNVKNYENL
GN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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