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Report for CCDS35585.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35585.1 Public Mus musculus 1 Gm973 23 108 98 CCDS HistoryNCBI Gene:381260Re-query CCDS DB by CCDS ID:35585.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114243.7 ENSMUSP00000109881.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114243.7Link to Ensembl Protein Viewer:ENSMUSP00000109881.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114243Re-query CCDS DB by Protein ID:ENSMUSP00000109881
Original member Current member NCBI NM_001013771.2 NP_001013793.2 Accepted alive Link to Nucleotide Sequence:NM_001013771.2Link to Protein Sequence:NP_001013793.2Re-query CCDS DB by Nucleotide ID:NM_001013771Re-query CCDS DB by Protein ID:NP_001013793Link to BLAST:NP_001013793.2

Chromosomal Locations for CCDS 35585.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59516432 59516518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59526711 59526977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59541314 59541473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59544574 59544729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59549912 59550039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59551134 59551296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59552420 59552562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59556156 59556324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59558086 59558226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59562643 59562810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59566594 59566704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59582396 59582475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59607733 59607805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59625087 59625177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59627457 59627607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59628170 59628284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59629995 59630326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59632214 59632416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59633147 59633319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59633994 59634262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3180 nt):
ATGAAAGCTGTTGCCAGGGAACCAGATGCCACGAGCAGGCCACTCCAGCAGCGTAGGAATACAAGCACAG
AGGCCAGGAGTGCTGGAGACTATTTGAACTGGAAGTCTCCAGAAGACTACATCCTTGTCAGTAAAGCCCA
GAATGGGGACAGTGCCAGCCAGCACTCCTGGAACCTCTTTCTTCCTAAGACCTTCAGCACAAGGAAGGGG
GCACTGATTCTCTACTCAGAAGGGCTAGCTGTGTCAGCATGGACACCCAGAGACAGGAAAAGAGGTCCCA
GGAAGAAGCAGGACCTTGGACTGCACACACTTCGGGACCTCAAAGAAGCCATCTTGGCATATGGAAGGAG
AAAGAGGAAGCAGGACAGCGCCTGGCGGCCTTACCTCTACTTCCGAAGCAAGCCAGAGAGCCAGACCCAA
CGGCAGATCCAGCCTGGGTATTCGGCCAAAAGATACCTCCGAGGCTTTCTGCGGACATGGCCCCCTGACA
TCATGCACCGGCTCCAGTGTGCAGGACACATCAAGGATTCTGTGCTGCTCCAGGACAGTCAGCTTGGGAT
ACCCAAGAATCTCAGGCCACAACAGGATCTTTCAGGTGTACCCCCAAAATACCATCTCCTGCCTGTCATC
CCTTCATTTCGGATTCAACAGAGATCGTCTTATGCACAAGGTCTGGATGAATGGGAAATTGATACATACA
TGGACCAGGGCTCTGTTGCTCAGAACCACAGCAATCCGGACACGCACCTGATGTCAGTCAGGAGGCAGCT
GTGGCAGGAAGATGAACTCCAGGCTGAGGACACATTGAGAGAGAGCCATCTCCGTGTCCACGCTTCGGAG
CAAAGTCACAATGGAAAGAGTCAGCAAGCCTCCAGGGAGGTCCTTGGGCGGGCCTCATTCAGTTACTTTC
AGCTTCCTACTGACAAATCCCTCTTCTCGTTCTACTGTGGAGCCTTCCCAGACAAACAAAGGAACATGAA
ACCCCACAAGGCCAGAGGCGGCTGCTTGTCACAGGAGCCTCCTGTTGAAAGATGCCTTTTCCCTCCTTTA
GCATCAGCCGTTGGCTCAGAACAAAATACCCTTGGGGAAACAAAGAAAAAAAAGGCACTGAGGACTCTGA
AATTACCTCCTGTTTCAGAAGAACCCCCCGGAGTCCTGAAACCCCGGAGGAGCCGATTTAAAGACAGTGA
ACCCCCAAAGGAGCTCTTCATTATCCCCATGGAGATTCATTTTCATGCCGCACAACCCCCAAAAGAAAAG
GCCAGCAGAAGAGGTGCTCGGCATCCTGAGTCAGAACCAGAAGAAGCCACACCTTTATGGTGGCCTCCCA
TGAAGCATCTGTACTTAGAAAGGCCAAGGGGGATAACGGTGCATCTCCCAGTGGACAGCAGCCAGGACAC
ACCCTCACCTCAAGAAGATGGTGATATCCTGGCCCAGAGCGTGAATCAACCCCTGGGTCTCCTACCCCCG
ATGAAAGGAAAGAAAAGTTCAGAGATCCAGAGAGACATGGACAGAACCAGGACATCGGGCTTCAGCAGTC
CCACAGGTTGCCCAAATGAGAGGGCACCGCCAGCAGGACCAGAAGACTCCAGAGATCTGACATTGAAACA
CTTCTTGCTGAGTCCAGATGGTGAAAACGTCTGCCTGACGCTCCCGAGGCTCATGGGAACAGAGGTGCTT
CCACTGGGACAAGCAAACGCTGGAGCCGGAGCCAGTCTTCATGGAAATCTTTATGAAACCTCCTCACGTT
TGGCTCAAGCTGCAGAGAGTCAGGAACGTGGAAGTGAACTTGACTCTCATGAAGAACCAGGAGGACCCCT
CAGAGGAAATGCCAAAGACAGCCAAGACCCAGAACTAAGGAACAAGACCCTTGCCTGCCTCAGTACTTCC
CTGGCTGAGTACAACCAGCCCTCTGAGGCTGACACCTTAAAGAGCATGGACGGAGATTACAATGTGCACC
ACCTGCACAGAGGACCTCTAAAACGTGAGCCTGCATTCCCAAAGAAGTTGGCTTCTGAGACTCCAAGAAA
AAAGAAGAAAAGGAGATCAAAACTGCTCAACCAAAAGACTGGAGTTGGCATCAATCATGGAAAGGATTTG
GTTGACAAAGCTAAGAGGAAGAAAAGAACCAAGACACACCAGGCCAAAGCTCTCAAGAAAGAGAGGGAAG
AAAGGGGCCTGGGGCAAGCAGAGGCTGCTGGAGGAAAGCCAAAGCATTCAAAAATTAAAAAGAAATCAGA
GCTAACTCCAAAAAAAGAGAAACTGGGAAGAAAAATGAAAAGGACACATAAAGAGAGGAATATGGAGATG
GCGGCAGGGCTGAGCAAGTCAGACATCACCAACTCCAAGGAAGCAGGTGGCACCTCACATCAAGGGCTCC
TCCGCTCCCACTCTGCAGCTGGACAACTTTCTCTTGAACTCGATGCTCTGGAGAGTCAGGTTGCTATAGA
TGGAAGATTATCATCCATCCAGGCCACAGATGTTGCTAGTGACATGGAATGTGAAGAGGAGAGAAGCCAT
GAAGACCCTTCCAAGGCCCTCCAGGATAAGAAGCAGCAGGAGAAGGCTTCTCGGGACAGAATTCGAATAG
AGAAGGCAGAGATGAGATGGCTGAAGGTGGAGCAGAGGAGAAGGGAGCAGGAGGAGCTGACTTGGCTCCA
TAAGGAGCAGCTGGAGAAAGCAGAGAAGATGAAGGAGGAGCTGGAGCTGGAGCAGCAAAGACGCACTGAG
GAGAACCGCCTGAGAAAGCAGAGACTGGAGGAAGAACGGCAGCAACAGGAGGAAGCAGAGAAAAAACGAA
GGCTCCAGTTGCAGGCAGCCCGGGAGAGAGCAAGGCAGCAGCAGGAGGAGCTCCGCAGGAAACTGCAAGA
AATACAGAGAAAAAAGCAGCAGGAAGCGGCAGAGAGGGCTGAGGCAGAGAAGCAAAGGCAGAAGGAACTG
GAGATGCAGTTAGCAGAAGAACAGAAACGCCTGATGGAAATGGCTGAAGAAGAACGGTTGGAGTACCAAC
AGCAGAAACTAGCAGCAGAAGAGAAAGCTAGGCAGGAGGCTGAGGAAAGGAGGAAACAGGAAGAGGAAGC
AGCAAAGCTAGCCCTGGAAGAAGCCACAAAACTAGCCCAGGAGCAAATCAGGTACTTGGACAGGGGGACA
ACTGCTGTCAGGGCTTGTTCTGAGGCTTGA

Translation (1059 aa):
MKAVAREPDATSRPLQQRRNTSTEARSAGDYLNWKSPEDYILVSKAQNGDSASQHSWNLFLPKTFSTRKG
ALILYSEGLAVSAWTPRDRKRGPRKKQDLGLHTLRDLKEAILAYGRRKRKQDSAWRPYLYFRSKPESQTQ
RQIQPGYSAKRYLRGFLRTWPPDIMHRLQCAGHIKDSVLLQDSQLGIPKNLRPQQDLSGVPPKYHLLPVI
PSFRIQQRSSYAQGLDEWEIDTYMDQGSVAQNHSNPDTHLMSVRRQLWQEDELQAEDTLRESHLRVHASE
QSHNGKSQQASREVLGRASFSYFQLPTDKSLFSFYCGAFPDKQRNMKPHKARGGCLSQEPPVERCLFPPL
ASAVGSEQNTLGETKKKKALRTLKLPPVSEEPPGVLKPRRSRFKDSEPPKELFIIPMEIHFHAAQPPKEK
ASRRGARHPESEPEEATPLWWPPMKHLYLERPRGITVHLPVDSSQDTPSPQEDGDILAQSVNQPLGLLPP
MKGKKSSEIQRDMDRTRTSGFSSPTGCPNERAPPAGPEDSRDLTLKHFLLSPDGENVCLTLPRLMGTEVL
PLGQANAGAGASLHGNLYETSSRLAQAAESQERGSELDSHEEPGGPLRGNAKDSQDPELRNKTLACLSTS
LAEYNQPSEADTLKSMDGDYNVHHLHRGPLKREPAFPKKLASETPRKKKKRRSKLLNQKTGVGINHGKDL
VDKAKRKKRTKTHQAKALKKEREERGLGQAEAAGGKPKHSKIKKKSELTPKKEKLGRKMKRTHKERNMEM
AAGLSKSDITNSKEAGGTSHQGLLRSHSAAGQLSLELDALESQVAIDGRLSSIQATDVASDMECEEERSH
EDPSKALQDKKQQEKASRDRIRIEKAEMRWLKVEQRRREQEELTWLHKEQLEKAEKMKEELELEQQRRTE
ENRLRKQRLEEERQQQEEAEKKRRLQLQAARERARQQQEELRRKLQEIQRKKQQEAAERAEAEKQRQKEL
EMQLAEEQKRLMEMAEEERLEYQQQKLAAEEKARQEAEERRKQEEEAAKLALEEATKLAQEQIRYLDRGT
TAVRACSEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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