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Report for CCDS18588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18588.1 Public Mus musculus 4 Foxo6 23 108 98 CCDS HistoryNCBI Gene:329934Re-query CCDS DB by CCDS ID:18588.1Re-query CCDS DB by GeneID:329934See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102656.3 ENSMUSP00000099716.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102656.3Link to Ensembl Protein Viewer:ENSMUSP00000099716.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102656Re-query CCDS DB by Protein ID:ENSMUSP00000099716
Original member Current member NCBI NM_194060.1 NP_918949.1 Accepted alive Link to Nucleotide Sequence:NM_194060.1Link to Protein Sequence:NP_918949.1Re-query CCDS DB by Nucleotide ID:NM_194060Re-query CCDS DB by Protein ID:NP_918949Link to BLAST:NP_918949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_918949.1 559 Q70KY4 559 100% 0 0

Chromosomal Locations for CCDS 18588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 120267917 120269182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120286839 120287252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCTGCGAAGCTGCGAGCGCATCAGGTGGACGTGGACCCGGACTTCGCGCCGCAGAGCCGGCCGCGCT
CGTGTACCTGGCCTCTGCCGCAGCCGGACTTGGCCGGCGACGAGGACGGGGCGCTGGGTGCAGGAGTAGC
CGAGGGTTCCGAGGACTGCGGGCCGGAACGCAGGGCGACGGCCCCAGCGATGGCCCCAGCGCCTCCGCTG
GGCGCAGAGGTCGGACCCTTGCGGAAAGCGAAGAGCTCCCGACGGAACGCGTGGGGGAACCTTTCCTACG
CCGACCTCATCACCAAAGCCATCGAGAGCGCCCCGGACAAGAGACTCACGCTCTCGCAGATCTACGACTG
GATGGTCCGCTACGTGCCCTACTTCAAGGATAAAGGCGACAGCAACAGCTCGGCCGGCTGGAAGAACTCC
ATTCGGCACAACCTGTCGCTGCACACCCGGTTCATCCGCGTGCAGAACGAGGGCACTGGCAAGAGTTCAT
GGTGGATGCTGAACCCCGAGGGCGGAAAGACAGGCAAGACCCCGCGGCGCCGGGCCGTGTCCATGGACAA
TGGGGCCAAGTTCCTGCGCATCAAGGGCAAGGCGAGCAAGAAGAAGCAGCTGCACCTGCCGGAACGGAGC
CCCGACGACAGCCCTCCGGGCGCACCAGTTCCAGGGCCCCTGTCGGCCTCCGCCAAGTGGGCGGCCAGCC
CGGCCTCACATGCCAGTGACGACTACGAGGCGTGGGCTGACTTCCGCGGCAGCAGGAGACCCCTGCTCGG
GGAGGCGGCTGAGCTGGAGGACGACGAGGCCCTGGAGGCCCTGGCACCGTCCTCGCCACTCATGTACCCA
AGCCCTGCGAGCGCGCTGTCGCCCGCCCTGGGCGCGCGCTGCCCGGGCGAGCTGCCGCGTCTGGCCGAGC
TGGGAGGTCCGCTGGGCCTGCACGGTGGCGGCGTGGCCGGGCTGCCGGACGCCCTGCTGGACGGCGCGCA
GGACGCGTACGGGCCGCGGGCACGCGCCGGGACCCCCTCCTACTTCGGCAGCTGCAAGGCGAGCGCCTAC
GGCGGGGGCGGGGGCTTCGGGCCGCCCGCTCTGGGCTCGCTGCGCCGCCTGCCCATGCAGACCATCCAGG
AGAACAAGCAGGCCAGCTTCGTGCAGGCCGCCGCGCCCTTCCGCCCCGGGGCGCTGCCCGCGCTGCTGCC
TCCGCCGCCGCCCGCGCCGAGGCCCGGCCCGCTGCTGGGCGCGCCCGGGGAGCTGGCGCTGGCGGGCGCG
GCCGCCGCTTACCCGGGCAAAGGAGCGGCCCCGTACGCGCCGCCGGCGCCCTCGCGCAGTGCCTTAGCCC
ACCCCATCAGCCTTATGACGCTGCCCGGCGAGGCGGGCGCCGCCGGCCTGGCCCCGCCGGCCCACGCCGC
AGCCTTCGGGGGTCCGCCCGGCGGCCTCCTGCTGGATGCGCTGCCCGGGCCCTACGCGGCCGCAGCAGCC
GGGCCTCTGGGTGCAGGGCCGGACCGCTTCCCGGCGGATCTGGACCTCGACATGTTTAGCGGGAGCCTCG
AGTGTGACGTCGAGTCCATCATCCTCAACGACTTCATGGACAGTGACGAAATGGACTTCAACTTCGACTC
AGCCCTGCCTCCGCCACCCCCGGGCCTGGCTGGGGCGCCGCCCCCTAACCAGAGCTGGGTGCCGGGCTGA

Translation (559 aa):
MAAKLRAHQVDVDPDFAPQSRPRSCTWPLPQPDLAGDEDGALGAGVAEGSEDCGPERRATAPAMAPAPPL
GAEVGPLRKAKSSRRNAWGNLSYADLITKAIESAPDKRLTLSQIYDWMVRYVPYFKDKGDSNSSAGWKNS
IRHNLSLHTRFIRVQNEGTGKSSWWMLNPEGGKTGKTPRRRAVSMDNGAKFLRIKGKASKKKQLHLPERS
PDDSPPGAPVPGPLSASAKWAASPASHASDDYEAWADFRGSRRPLLGEAAELEDDEALEALAPSSPLMYP
SPASALSPALGARCPGELPRLAELGGPLGLHGGGVAGLPDALLDGAQDAYGPRARAGTPSYFGSCKASAY
GGGGGFGPPALGSLRRLPMQTIQENKQASFVQAAAPFRPGALPALLPPPPPAPRPGPLLGAPGELALAGA
AAAYPGKGAAPYAPPAPSRSALAHPISLMTLPGEAGAAGLAPPAHAAAFGGPPGGLLLDALPGPYAAAAA
GPLGAGPDRFPADLDLDMFSGSLECDVESIILNDFMDSDEMDFNFDSALPPPPPGLAGAPPPNQSWVPG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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