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Report for CCDS393.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
393.2 Public Homo sapiens 1 TFAP2E 24 110 108 CCDS HistoryNCBI Gene:339488Re-query CCDS DB by CCDS ID:393.2See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 393.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data, and by data in PMID:14636996.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 393.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373235.4 ENSP00000362332.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373235.4Link to Ensembl Protein Viewer:ENSP00000362332.3Re-query CCDS DB by Nucleotide ID:ENST00000373235Re-query CCDS DB by Protein ID:ENSP00000362332
Original member Current member NCBI NM_178548.4 NP_848643.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178548.4Link to Protein Sequence:NP_848643.2Re-query CCDS DB by Nucleotide ID:NM_178548Re-query CCDS DB by Protein ID:NP_848643Link to BLAST:NP_848643.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848643.2 442 Q6VUC0 442 100% 0 0

Chromosomal Locations for CCDS 393.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 35573578 35573604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35573927 35574409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35574949 35575000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35588330 35588552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35589930 35590048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35590634 35590775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35594394 35594676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGCTGGTGCACACCTACTCCGCCATGGAGCGCCCCGACGGGCTGGGAGCAGCTGCCGGCGGGGCCCGCC
TGTCGTCTCTGCCCCAGGCGGCCTACGGGCCGGCGCCCCCGCTCTGCCACACGCCGGCCGCCACAGCTGC
CGCCGAATTCCAGCCGCCCTACTTCCCGCCGCCCTACCCGCAGCCACCGCTGCCCTACGGTCAGGCGCCC
GACGCCGCCGCAGCCTTTCCCCACCTGGCAGGGGACCCATATGGCGGCCTGGCGCCCCTGGCGCAGCCGC
AGCCTCCTCAGGCCGCCTGGGCCGCGCCCCGCGCAGCCGCCCGCGCCCACGAGGAGCCTCCCGGCCTGCT
GGCACCGCCCGCCCGCGCCCTGGGCCTTGACCCGCGCCGTGACTATGCCACTGCCGTGCCCCGGCTCCTG
CACGGCCTGGCCGACGGCGCGCACGGCCTGGCAGACGCACCTCTCGGCCTTCCGGGGCTGGCGGCGGCCC
CCGGTCTGGAGGACCTGCAGGCAATGGACGAGCCGGGAATGAGCCTCCTAGACCAGTCCGTGATCAAGAA
AGTGCCCATCCCCTCCAAAGCCAGCAGCCTCTCAGCCCTCTCCTTGGCCAAAGACAGCCTGGTGGGCGGC
ATCACAAATCCTGGTGAGGTCTTCTGCTCCGTGCCCGGCCGGCTTTCACTGCTCAGCTCAACGTCCAAGT
ACAAGGTGACGGTGGGGGAGGTGCAGCGGCGACTCTCGCCTCCCGAGTGCCTCAACGCCTCCCTCCTGGG
GGGTGTCCTCCGCAGGGCCAAGTCCAAAAATGGGGGCCGGTGTTTGCGGGAACGGTTAGAGAAGATTGGG
CTCAACCTGCCAGCTGGCCGTCGCAAGGCCGCCAATGTGACGCTGCTGACTTCGCTAGTGGAAGGAGAGG
CCGTGCACCTGGCCCGAGACTTCGGTTACGTCTGTGAGACGGAGTTCCCAGCCAAGGCAGCTGCCGAGTA
CCTGTGCCGACAGCACGCTGACCCGGGGGAGCTGCACAGCCGCAAGAGCATGCTGCTGGCTGCCAAGCAG
ATCTGCAAGGAGTTTGCAGACTTGATGGCTCAGGACCGCTCACCGCTGGGCAACAGCCGCCCAGCACTCA
TCCTGGAGCCCGGAGTACAGAGCTGCTTGACACACTTTAGCCTCATCACCCATGGCTTCGGTGGGCCTGC
CATCTGTGCTGCCCTCACTGCCTTCCAGAACTATTTGCTGGAGTCACTCAAGGGGCTGGACAAGATGTTT
CTAAGCAGTGTGGGCAGTGGGCATGGTGAAACCAAGGCTTCGGAGAAGGATGCCAAGCATCGGAAATAA

Translation (442 aa):
MLVHTYSAMERPDGLGAAAGGARLSSLPQAAYGPAPPLCHTPAATAAAEFQPPYFPPPYPQPPLPYGQAP
DAAAAFPHLAGDPYGGLAPLAQPQPPQAAWAAPRAAARAHEEPPGLLAPPARALGLDPRRDYATAVPRLL
HGLADGAHGLADAPLGLPGLAAAPGLEDLQAMDEPGMSLLDQSVIKKVPIPSKASSLSALSLAKDSLVGG
ITNPGEVFCSVPGRLSLLSSTSKYKVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRCLRERLEKIG
LNLPAGRRKAANVTLLTSLVEGEAVHLARDFGYVCETEFPAKAAAEYLCRQHADPGELHSRKSMLLAAKQ
ICKEFADLMAQDRSPLGNSRPALILEPGVQSCLTHFSLITHGFGGPAICAALTAFQNYLLESLKGLDKMF
LSSVGSGHGETKASEKDAKHRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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