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Report for CCDS38391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38391.1 Public Mus musculus 3 E2f5 23 108 98 CCDS HistoryNCBI Gene:13559Re-query CCDS DB by CCDS ID:38391.1Re-query CCDS DB by GeneID:13559See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029069.12 ENSMUSP00000029069.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029069.12Link to Ensembl Protein Viewer:ENSMUSP00000029069.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029069Re-query CCDS DB by Protein ID:ENSMUSP00000029069
Original member NCBI NM_007892.2 NP_031918.2 Updated not alive Link to Nucleotide Sequence:NM_007892.2Link to Protein Sequence:NP_031918.2Re-query CCDS DB by Nucleotide ID:NM_007892Re-query CCDS DB by Protein ID:NP_031918
Current member NCBI NM_007892.3 NP_031918.2 Accepted alive Link to Nucleotide Sequence:NM_007892.3Link to Protein Sequence:NP_031918.2Re-query CCDS DB by Nucleotide ID:NM_007892Re-query CCDS DB by Protein ID:NP_031918Link to BLAST:NP_031918.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031918.2 335 Q61502 335 100% 0 0

Chromosomal Locations for CCDS 38391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14578820 14579023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14587310 14587419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14588140 14588301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14601003 14601046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14602648 14602712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14603638 14603905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14605125 14605169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14605608 14605717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCGGCGGCGGAGCCCACGAGCTCTGCTCAGCCCACGCCGCAGGCCCAGGCTCAGCCGCCGCCGCATG
GGGCGCCATCCTCGCAGCCGTCCGCGGCGCTCGCGGGGGGCAGCAGCCGGCACGAGAAGAGCCTGGGCTT
GCTTACCACCAAATTCGTGTCGTTGCTGCAGGAGGCGCAGGACGGCGTCCTGGATCTCAAAGCGGCTGCA
GATACCTTGGCTGTGAGGCAAAAGCGAAGAATTTATGATATCACCAATGTCTTAGAGGGAATTGATCTAA
TTGAAAAAAAATCAAAGAACAGTATCCAGTGGAAGGGTGTAGGTGCTGGCTGTAATACTAAAGAAGTTAT
CGATAGATTAAGGTGTCTTAAAGCTGAAATTGAAGATCTCGAATTGAAGGAAAGAGAACTTGACCAGCAG
AAGTTGTGGCTACAGCAAAGCATCAAAAATGTGATGGAAGACTCCATTAATAACAGATTTTCTTATGTAA
CTCACGAAGACATCTGCAATTGCTTTCATGGTGATACACTGTTGGCCATTCAGGCACCTTCTGGTACACA
GCTGGAAGTACCTATTCCAGAAATGGGACAGAATGGACAAAAGAAATACCAGATAAATCTGAAGAGTCAC
TCAGGGCCTATCCATGTGCTACTTATAAATAAAGAGTCCAGTTCATCTAAGCCAGTGGTTTTTCCTGTTC
CCCCACCTGATGACCTCACACAGCCTTCCTCCCAGTCCTCAACTTCAGTGACTCCACAGAAATCCACCAT
GGCTGCTCAAAACCTGCCTGAGCAGCATGTTTCCGAAAGAAGCCAGACTTTCCAGCAGACACCAGCTGCA
GAAGTATCTTCAGGATCTATTAGTGGAGACATCATTGATGAACTGATGTCTTCTGATGTGTTTCCTCTTT
TACGGCTTTCTCCTACCCCAGCAGATGACTACAACTTTAATTTAGATGATAATGAAGGAGTTTGTGATCT
GTTTGATGTTCAGATACTAAATTATTAG

Translation (335 aa):
MAAAEPTSSAQPTPQAQAQPPPHGAPSSQPSAALAGGSSRHEKSLGLLTTKFVSLLQEAQDGVLDLKAAA
DTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRCLKAEIEDLELKERELDQQ
KLWLQQSIKNVMEDSINNRFSYVTHEDICNCFHGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSH
SGPIHVLLINKESSSSKPVVFPVPPPDDLTQPSSQSSTSVTPQKSTMAAQNLPEQHVSERSQTFQQTPAA
EVSSGSISGDIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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