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Report for CCDS24626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24626.1 Public Mus musculus 11 Rnf130 23 108 98 CCDS HistoryNCBI Gene:59044Re-query CCDS DB by CCDS ID:24626.1Re-query CCDS DB by GeneID:59044See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102776.4 ENSMUSP00000099837.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102776.4Link to Ensembl Protein Viewer:ENSMUSP00000099837.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102776Re-query CCDS DB by Protein ID:ENSMUSP00000099837
Original member Current member NCBI NM_021540.4 NP_067515.2 Accepted alive Link to Nucleotide Sequence:NM_021540.4Link to Protein Sequence:NP_067515.2Re-query CCDS DB by Nucleotide ID:NM_021540Re-query CCDS DB by Protein ID:NP_067515Link to BLAST:NP_067515.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067515.2 419 Q8VEM1 419 100% 0 0

Chromosomal Locations for CCDS 24626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50025401 50025647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50052776 50052970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50071171 50071421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50085741 50085812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50087379 50087461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50093723 50093819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50095776 50095980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50099246 50099339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50104549 50104564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGAGCGGCGCGGCGCGAGCGGGCCCGGCCCGGCTCGCGGCGCTGGCCCTGCTGACTTGCAGCCTGTGGC
CGACGCGAGCGGACAACGCGAGCCAGGAGTACTACACGGCGCTCATCAACGTGACGGTGCAGGAGCCCGG
CCGCGGCACCCCGCTCACGTTCCGCATCGACCGCGGGCGCTACGGGCTCGACTCACCCAAGGCCGAGGTC
CGCGGCCAGGTGCTGGCACCGCTGCCCATCCACGGAGTTGCTGATCATCTGGGCTGTGATCCTCAAACAC
GGTTCTTTGTCCCTCCTAATATCAAACAGTGGATCGCCTTGCTACAAAGAGGAAATTGCACCTTTAAAGA
GAAAATATCACGGGCTGCTTTTCACAATGCGGTTGCTGTAGTCATCTACAATAATAAATCCAAAGAGGAG
CCGGTCACCATGACTCATCCAGGCACGGGAGATATTATTGCTGTCATGATAACAGAATTGAGGGGTAAGG
ATATTTTGAGTTATCTGGAGAAAAACATCTCTGTACAAATGACAATAGCTGTTGGAACTCGAATGCCGCC
AAAGAACTTCAGCCGTGGCTCTCTAGTCTTCGTGTCAATCTCCTTTATTGTTTTGATGATTATTTCTTCA
GCGTGGCTCATATTCTACTTCATTCAGAAGATCAGGTACACAAATGCTCGGGACAGGAACCAGCGTCGTC
TTGGAGACGCAGCCAAGAAAGCCATCAGTAAATTGACAACTAGAACGGTGAAAAAGGGCGATAAGGAAAC
AGACCCAGACTTCGATCACTGTGCAGTCTGCATAGAAAGCTATAAGCAGAATGATGTTGTTCGGGTTCTC
CCCTGCAAGCATGTTTTCCACAAATCCTGTGTGGATCCCTGGCTCAGTGAACACTGTACCTGTCCTATGT
GCAAACTTAATATTTTGAAAGCCCTAGGAATTGTGCCAAATCTGCCATGTACTGATAATGTAGCCTTTGA
TATGGAAAGGCTGACCAGAACCCAAGCGGTTAACCGGAGAGCAGCCCTTGGTGACCTTGCCGGTGACAGT
TCCCTTGGCCTTGAGCCACTGAGAACTTCGGGGATATCGCCTCTTCCTCAAGATGGGGAGCTCACTCCTC
GCACGGGTGAAATCAACATTGCAGTAACAAAAGAATGGTTTATTATTGCCAGTTTTGGCCTCCTCAGTGC
TCTCACACTCTGCTACATGATCATCAGAGCCACAGCTAGCTTGAATGCTAATGAGGTAGAATGGTTTTGA

Translation (419 aa):
MSGAARAGPARLAALALLTCSLWPTRADNASQEYYTALINVTVQEPGRGTPLTFRIDRGRYGLDSPKAEV
RGQVLAPLPIHGVADHLGCDPQTRFFVPPNIKQWIALLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEE
PVTMTHPGTGDIIAVMITELRGKDILSYLEKNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISS
AWLIFYFIQKIRYTNARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVL
PCKHVFHKSCVDPWLSEHCTCPMCKLNILKALGIVPNLPCTDNVAFDMERLTRTQAVNRRAALGDLAGDS
SLGLEPLRTSGISPLPQDGELTPRTGEINIAVTKEWFIIASFGLLSALTLCYMIIRATASLNANEVEWF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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