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Report for CCDS57290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57290.1 Public Mus musculus 4 4930522H14Rik 23 108 98 CCDS HistoryNCBI Gene:67646Re-query CCDS DB by CCDS ID:57290.1Re-query CCDS DB by GeneID:67646See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082306.7 ENSMUSP00000080923.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082306.7Link to Ensembl Protein Viewer:ENSMUSP00000080923.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000082306Re-query CCDS DB by Protein ID:ENSMUSP00000080923
Original member Current member NCBI NM_001199090.1 NP_001186019.1 Accepted alive Link to Nucleotide Sequence:NM_001199090.1Link to Protein Sequence:NP_001186019.1Re-query CCDS DB by Nucleotide ID:NM_001199090Re-query CCDS DB by Protein ID:NP_001186019Link to BLAST:NP_001186019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186019.1 226 Q9CPZ3-2 226 100% 0 0

Chromosomal Locations for CCDS 57290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109505428 109505825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109514829 109514865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109524322 109524457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109527937 109528042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109531096 109531099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGGTGTCTTTAGTCACTTAACCTACTTTATGGCTGCTGGAGCTCTTAGTCTGGGAATTGGATTCTTTG
CTTTGGCATCTGCTTTGTGGTTCCTGATTTGCAAACGAAGAGAACTATTTGAGGAGTCCAAGTTTAAGGA
ATTTGGTGAAAATATGAAGCAAGGATCATGCAAACCAAAGCTTAAAGCTCACCCTCAGTGTGTTTTCATT
TCCCGGAACTTCCATGCTGGCTATTTACAATCACAGACGGAGAAAAGAGAAAAGGAAGAAGCAGAAAAAA
AAGCTGTCAGAAGTCACTCTAAAGTTGAATTCTGCCTCCAGGATCCCATCAGCTGTGAGTCCCCTGAGGT
GACCTCAGTAGCAAATGGCAGCAGTGTGTCAACATTGAGCTTATCAACATCAATCTCTAGTTCTTACTGC
TGCCAGACCGTAGAAGAAGCCGAAGACTGGCTTACTGATGATTGTCTAGAAACCAGGATTCCCTTAAAGA
ATCCTTTACTCGGGGAGCCTCTAAAAAAGAAGGTGCTTGCGTACCTGTCATCCATTTCATTAGAAGAGTG
GCCTGGGAACACAGTGAGCAACACATTTTGTAGCGAGCAAAAAACTGACAGCCTTAAGGAACTGTTGGTA
CTGAAAAACACAGAGGTTGGCAAACACAACCTTCAATTTGATATTGAATGA

Translation (226 aa):
MGVFSHLTYFMAAGALSLGIGFFALASALWFLICKRRELFEESKFKEFGENMKQGSCKPKLKAHPQCVFI
SRNFHAGYLQSQTEKREKEEAEKKAVRSHSKVEFCLQDPISCESPEVTSVANGSSVSTLSLSTSISSSYC
CQTVEEAEDWLTDDCLETRIPLKNPLLGEPLKKKVLAYLSSISLEEWPGNTVSNTFCSEQKTDSLKELLV
LKNTEVGKHNLQFDIE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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