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Report for CCDS32898.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32898.2 Public Homo sapiens 19 OR7G1 24 110 108 CCDS HistoryNCBI Gene:125962Re-query CCDS DB by CCDS ID:32898.2Re-query CCDS DB by GeneID:125962See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 32898.1
The coding region has been updated to represent an alternate splice pattern that is more supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32898.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541538.1 ENSP00000444134.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000541538.1Link to Ensembl Protein Viewer:ENSP00000444134.1Re-query CCDS DB by Nucleotide ID:ENST00000541538Re-query CCDS DB by Protein ID:ENSP00000444134
Original member Current member NCBI NM_001005192.2 NP_001005192.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005192.2Link to Protein Sequence:NP_001005192.2Re-query CCDS DB by Nucleotide ID:NM_001005192Re-query CCDS DB by Protein ID:NP_001005192Link to BLAST:NP_001005192.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005192.2 311 Q8NGA0 311 100% 0 0

Chromosomal Locations for CCDS 32898.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9114828 9115763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGGACCCAGAAACCAAACAGCTGTTTCAGAATTTCTTCTCATGAAAGTGACAGAGGACCCAGAACTGA
AGTTAATCCCTTTCAGCCTGTTCCTGTCCATGTACCTGGTCACCATCCTGGGGAACCTGCTCATTCTCCT
GGCTGTCATCTCTGACTCCCACCTCCACACCCCCATGTACTTCCTTCTCTTTAATCTCTCCTTTACTGAC
ATCTGTTTAACCACAACCACAGTCCCAAAGATCCTAGTGAACATCCAAGCTCAGAATCAGAGTATCACTT
ACACAGGCTGCCTCACCCAGATCTGTCTTGTCTTGGTTTTTGCTGGCTTGGAAAGTTGCTTTCTTGCAGT
CATGGCCTACGACCGCTATGTGGCCATTTGCCACCCACTGAGGTACACAGTCCTCATGAATGTCCATTTC
TGGGGCTTGCTGATTCTTCTCTCCATGTTCATGAGCACTATGGATGCCCTGGTTCAGAGTCTGATGGTAT
TGCAGCTGTCCTTCTGCAAAAACGTTGAAATCCCTTTGTTCTTCTGTGAAGTCGTTCAGGTCATCAAGCT
CGCCTGTTCTGACACCCTCATCAACAACATCCTCATATATTTTGCAAGTAGTGTATTTGGTGCAATTCCT
CTCTCTGGAATAATTTTCTCTTATTCTCAAATAGTCACCTCTGTTCTGAGAATGCCATCAGCAAGAGGAA
AGTATAAAGCGTTTTCCACCTGTGGCTGTCACCTCTCTGTTTTTTCCTTGTTCTATGGGACAGCTTTTGG
GGTGTACATTAGTTCTGCTGTTGCTGAGTCTTCCCGAATTACTGCTGTGGCTTCAGTGATGTACACTGTG
GTCCCTCAAATGATGAACCCCTTCATCTACAGCCTGAGAAATAAGGAGATGAAGAAAGCTTTGAGGAAAC
TTATTGGTAGGCTGTTTCCTTTTTAG

Translation (311 aa):
MGPRNQTAVSEFLLMKVTEDPELKLIPFSLFLSMYLVTILGNLLILLAVISDSHLHTPMYFLLFNLSFTD
ICLTTTTVPKILVNIQAQNQSITYTGCLTQICLVLVFAGLESCFLAVMAYDRYVAICHPLRYTVLMNVHF
WGLLILLSMFMSTMDALVQSLMVLQLSFCKNVEIPLFFCEVVQVIKLACSDTLINNILIYFASSVFGAIP
LSGIIFSYSQIVTSVLRMPSARGKYKAFSTCGCHLSVFSLFYGTAFGVYISSAVAESSRITAVASVMYTV
VPQMMNPFIYSLRNKEMKKALRKLIGRLFPF


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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