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Report for CCDS40396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40396.1 Public Mus musculus 8 Lsm6 23 108 98 CCDS HistoryNCBI Gene:78651Re-query CCDS DB by CCDS ID:40396.1Re-query CCDS DB by GeneID:78651See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051867.6 ENSMUSP00000049722.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051867.6Link to Ensembl Protein Viewer:ENSMUSP00000049722.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051867Re-query CCDS DB by Protein ID:ENSMUSP00000049722
Original member Current member EBI ENSMUST00000130325.7 ENSMUSP00000119841.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130325.7Link to Ensembl Protein Viewer:ENSMUSP00000119841.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130325Re-query CCDS DB by Protein ID:ENSMUSP00000119841
Original member Current member EBI ENSMUST00000146824.1 ENSMUSP00000148221.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146824.1Link to Ensembl Protein Viewer:ENSMUSP00000148221.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146824Re-query CCDS DB by Protein ID:ENSMUSP00000148221
Original member Current member NCBI NM_001191004.1 NP_001177933.1 Accepted alive Link to Nucleotide Sequence:NM_001191004.1Link to Protein Sequence:NP_001177933.1Re-query CCDS DB by Nucleotide ID:NM_001191004Re-query CCDS DB by Protein ID:NP_001177933Link to BLAST:NP_001177933.1
Original member Current member NCBI NM_030145.3 NP_084421.1 Accepted alive Link to Nucleotide Sequence:NM_030145.3Link to Protein Sequence:NP_084421.1Re-query CCDS DB by Nucleotide ID:NM_030145Re-query CCDS DB by Protein ID:NP_084421Link to BLAST:NP_084421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177933.1 80 P62313 80 100% 0 0
NP_084421.1 80 P62313 80 100% 0 0

Chromosomal Locations for CCDS 40396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 78808211 78808245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78809947 78810060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 78812976 78813069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (243 nt):
ATGAGCCTGCGGAAGCAAACCCCTAGCGACTTCTTAAAGCAGATCATCGGACGGCCAGTTGTGGTGAAAT
TAAATTCTGGCGTGGATTATCGAGGGGTCCTGGCCTGCCTGGATGGCTACATGAATATAGCCCTGGAACA
GACAGAGGAGTATGTAAATGGACAGCTGAAGAATAAGTACGGAGATGCGTTCATCCGAGGAAACAATGTG
CTGTACATAAGTACACAGAAGAGGCGGATGTGA

Translation (80 aa):
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNV
LYISTQKRRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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