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Report for CCDS57555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57555.1 Public Mus musculus 7 Lins1 23 108 98 CCDS HistoryNCBI Gene:72635Re-query CCDS DB by CCDS ID:57555.1Re-query CCDS DB by GeneID:72635See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077967.12 ENSMUSP00000077117.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077967.12Link to Ensembl Protein Viewer:ENSMUSP00000077117.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077967Re-query CCDS DB by Protein ID:ENSMUSP00000077117
Original member Current member NCBI NM_001191001.1 NP_001177930.1 Accepted alive Link to Nucleotide Sequence:NM_001191001.1Link to Protein Sequence:NP_001177930.1Re-query CCDS DB by Nucleotide ID:NM_001191001Re-query CCDS DB by Protein ID:NP_001177930Link to BLAST:NP_001177930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177930.1 759 Q3U1D0-3 759 100% 0 0

Chromosomal Locations for CCDS 57555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 66708119 66708553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66708639 66708728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66709294 66709435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66710159 66710746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66711873 66712044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66713801 66714653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGAGATACATTTTGGATATCAAAATGGAAATAGTCCAAGAAATTTTGGATCAATTATACAGGAAAGTAC
TTCTTGGAACCACTCTTGAAGATGACGTCCATGGTTACATCTTCTATCTCAACCCAGATCTCTCAGAACA
AGATGGCTGTCCAGCCTTCCCTGTAGCTCAGTCTAATGCCAGTGGTGTGCTTGATGGCATGGCAGGCCAG
CATGGGCCATCCTCCCACGAGGTGGCCACCCTTCCTGGAGCACAGGAGTGTCCCAAGAGACAGCTTCAGA
TGGACAGAACCCGGGAGATGAAGCTCCTTCAGTTAACAGTGATTGACACGATGCTGAGCCAGGTACTGTC
TGATGAAACGGAGACCCACGCAAAGGAGGGGTACAGAGAGCTAACTGAAGTCCTTTTGCAGTCTGTTGAA
CTCGATTCCAAATTGATGCGCATGCTCCAGAATTCTGACAAGTTGTTGTCCCACATGGCTGCGAAGTGCC
TCGCCTCGCTACTGTATTTCCAGCTGAGAGAGAAGAAAATGTTAAGTAATTCCTGGGTCACTTTCTGCCA
GAAGCATCTCTCGGAGTCCTCTGAGAGTGGTGAAGCAGTGCGTTGCCTCTGGATCCTTACAGCTGTGATA
AAAGAGATCCTTAAAGACACACATTCACAGAGAGCAGAAAGTCTAAAGCAGCTCTTGACTCCTTTTGACA
TTACTTTTGAAGTGTTCTACAATTCCTTATTTTCCCAGCATTTTGGAGACTTCCAGAGCCCCTCTAACTT
AGCCAGCAGCCTGATGTGCTTTCTGGAGCTGCTTGAGCTTCTCGTAGCCTCCAGAATCCACCTGAAACTG
CACTTCAGGAGCCAGAGGATGCTATTTTTGAAACCCCATGCTCTAGATATTCTTGCCTGGCCTATTCCAG
CTTTTATAAAAAGGAAGTTGGTTATACTCGTCAAAAAGTGCCTTCTCTGTAAAGTGGGCGAAGACCTCTG
CCGGGAACCTGCGCCCTCCCTGATGTCACCAGATCACCTTCTGGACAGTGACATGCTCACTTTAGCTGAC
ACACTTCTGCACGCTGTACATGTGGGGTTGTGGAAGGCACTGGCTGTTTCTGGAAAGCCTTCCTGCTTTG
GAGGGGATGAAGTTCAACCTGGATGCAGACTCAGGACTGGTCCTGATCACGTGACCCTGAGAGCAGCAAG
CTTAATTACAGTGAAGTCCTTAGAAATCAAGTCCCAGAATTGCACCTCAGCAGCTGAGATGAAAGTTGCC
TTGCAGACGTTCATGTCCGAGCTACTGGCCTTCTTAAAGCCTCACCTCCAGCCCTCTCTACAGCCACACA
ACCCATGCGAGTGGCTGTCCAGGGTCTTCATAGAGCAGGACGATGACATGCTGGAGGCTGCCAAAGCCTC
CCTGAGCATCTACCTCCAGCTGACCAGAGAGTGGGATGCTTCGGCAAGTCTGACCCAAGAAAAGGAAGCA
TGGATCCGCTCCACACATGGACATGGCTGTAACCCTCACTGTGTTTTCTTATTCTTCTTGAAGAATGTAG
CATTCGATTCTACTGTTCTTCTCGACTTCTTGATATCCTCAGAGACCTGTTTCCTTGAATATTTTGTTAA
ATATTTAAAACTGCTGCAGAAAGACTGGGCCCACTTTCTGTCCATCTGCAAGTTCTTTGCTGCAGTGGAA
TCACAATGTGGAATGCTTGTTCATGATCCTGTCCCCTCACCTGCCCGTGGCAGAAGCACCAGCCTCACAG
TGCCTCATGCTCCGGCTTCTCCAGTTGGAGAGAACACTTGCCCCTGGCTCCCCTGGGCTTCTGATGCCTC
CTCCGAATCCCAGAGCCAGGTCATGATGCCCAAGGAAACTCTCCCAGTGCCAGCTAATGGCCCACCTTCC
CGGACACCGCAGAGTCTGGTAGATTATGACAGCTCCGAAGCTTCTGAGGAGGAAACCACAAGTGAGCATT
TAGCAAACAGCAAACAGACATCTTTATGTCAAGAAAGGTCTGAGGAGATCCAGGGCCTGCCTAGGACATG
GGAGGAGCAAAAGGAACATAGCCTGGAGCCTTTGCTCTCTGCAGAGTCCAGTTCTCCCTTCTCTGCCAAG
GGTAGAGTTGCTGCAGACGGGACTGTCTGGCAAGTGGGATTGTTTCTTCGTACAGTGAAATGCCTTGAGG
AGCTACAGGGAGCAATTTACCGTTTGCAGGAGAAAAATCTCTTTCCATATAACCCAGCGGCACTTCTGAA
GTTGTTGAAAGGTGTGGAGGCCAAGTGTGTTAACGTCTGA

Translation (759 aa):
MRYILDIKMEIVQEILDQLYRKVLLGTTLEDDVHGYIFYLNPDLSEQDGCPAFPVAQSNASGVLDGMAGQ
HGPSSHEVATLPGAQECPKRQLQMDRTREMKLLQLTVIDTMLSQVLSDETETHAKEGYRELTEVLLQSVE
LDSKLMRMLQNSDKLLSHMAAKCLASLLYFQLREKKMLSNSWVTFCQKHLSESSESGEAVRCLWILTAVI
KEILKDTHSQRAESLKQLLTPFDITFEVFYNSLFSQHFGDFQSPSNLASSLMCFLELLELLVASRIHLKL
HFRSQRMLFLKPHALDILAWPIPAFIKRKLVILVKKCLLCKVGEDLCREPAPSLMSPDHLLDSDMLTLAD
TLLHAVHVGLWKALAVSGKPSCFGGDEVQPGCRLRTGPDHVTLRAASLITVKSLEIKSQNCTSAAEMKVA
LQTFMSELLAFLKPHLQPSLQPHNPCEWLSRVFIEQDDDMLEAAKASLSIYLQLTREWDASASLTQEKEA
WIRSTHGHGCNPHCVFLFFLKNVAFDSTVLLDFLISSETCFLEYFVKYLKLLQKDWAHFLSICKFFAAVE
SQCGMLVHDPVPSPARGRSTSLTVPHAPASPVGENTCPWLPWASDASSESQSQVMMPKETLPVPANGPPS
RTPQSLVDYDSSEASEEETTSEHLANSKQTSLCQERSEEIQGLPRTWEEQKEHSLEPLLSAESSSPFSAK
GRVAADGTVWQVGLFLRTVKCLEELQGAIYRLQEKNLFPYNPAALLKLLKGVEAKCVNV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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