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Report for CCDS21348.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21348.2 Public Mus musculus 7 Lins1 23 108 98 CCDS HistoryNCBI Gene:72635Re-query CCDS DB by CCDS ID:21348.2Re-query CCDS DB by GeneID:72635See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21348.1
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 266 aa longer and changes the protein length from 498 aa to 764 aa. There is also a well conserved downstream AUG, that has a strong Kozak signal in mouse, and results in an additional N-terminal 8 amino acids when compared to human homolog NP_001035704.1. The uAUG has a weak Kozak signal and appears to be only conserved in mouse, rat and dog, while the dAUG shows much better conservation. This means that the downstream AUG, which would produce a 756 aa protein, may also be used due to leaky scanning.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21348.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121777.8 ENSMUSP00000112404.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121777.8Link to Ensembl Protein Viewer:ENSMUSP00000112404.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000121777Re-query CCDS DB by Protein ID:ENSMUSP00000112404
Original member Current member NCBI NM_152815.2 NP_690028.2 Accepted alive Link to Nucleotide Sequence:NM_152815.2Link to Protein Sequence:NP_690028.2Re-query CCDS DB by Nucleotide ID:NM_152815Re-query CCDS DB by Protein ID:NP_690028Link to BLAST:NP_690028.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690028.2 764 Q3U1D0-1 764 100% 0 0

Chromosomal Locations for CCDS 21348.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 66708119 66708553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66708639 66708743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66709294 66709435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66710159 66710746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66711873 66712044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66713801 66714653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2295 nt):
ATGAGATACATTTTGGATATCAAAATGGAAATAGTCCAAGAAATTTTGGATCAATTATACAGGAAAGTAC
TTCTTGGAACCACTCTTGAAGATGACGTCCATGGTTACATCTTCTATCTCAACCCAGATCTCTCAGAACA
AGATGGCTGTCCAGCCTTCCCTGTAGCTCAGTCTAATGCCAGTGGTGTGCTTGATGGCATGGCAGGCCAG
CATGGGCCATCCTCCCACGAGGTGGCCACCCTTCCTGGAGCACAGGAGTGTCCCAAGAGACAGCTTCAGA
TGGACAGAACCCGGGAGATGAAGCTCCTTCAGTTAACAGTGATTGACACGATGCTGAGCCAGGTACTGTC
TGATGAAACGGAGACCCACGCAAAGGAGGGGTACAGAGAGCTAACTGAAGTCCTTTTGCAGTCTGTTGAA
CTCGATTCCAAATTGATGCGCATGCTCCAGAATTCTGACAAGTTGTTGTCCCACATGGCTGCGAAGTGCC
TCGCCTCGCTACTGTATTTCCAGCTGAGAGAGAAGGTCAGAAGCCAGCACAAAATGTTAAGTAATTCCTG
GGTCACTTTCTGCCAGAAGCATCTCTCGGAGTCCTCTGAGAGTGGTGAAGCAGTGCGTTGCCTCTGGATC
CTTACAGCTGTGATAAAAGAGATCCTTAAAGACACACATTCACAGAGAGCAGAAAGTCTAAAGCAGCTCT
TGACTCCTTTTGACATTACTTTTGAAGTGTTCTACAATTCCTTATTTTCCCAGCATTTTGGAGACTTCCA
GAGCCCCTCTAACTTAGCCAGCAGCCTGATGTGCTTTCTGGAGCTGCTTGAGCTTCTCGTAGCCTCCAGA
ATCCACCTGAAACTGCACTTCAGGAGCCAGAGGATGCTATTTTTGAAACCCCATGCTCTAGATATTCTTG
CCTGGCCTATTCCAGCTTTTATAAAAAGGAAGTTGGTTATACTCGTCAAAAAGTGCCTTCTCTGTAAAGT
GGGCGAAGACCTCTGCCGGGAACCTGCGCCCTCCCTGATGTCACCAGATCACCTTCTGGACAGTGACATG
CTCACTTTAGCTGACACACTTCTGCACGCTGTACATGTGGGGTTGTGGAAGGCACTGGCTGTTTCTGGAA
AGCCTTCCTGCTTTGGAGGGGATGAAGTTCAACCTGGATGCAGACTCAGGACTGGTCCTGATCACGTGAC
CCTGAGAGCAGCAAGCTTAATTACAGTGAAGTCCTTAGAAATCAAGTCCCAGAATTGCACCTCAGCAGCT
GAGATGAAAGTTGCCTTGCAGACGTTCATGTCCGAGCTACTGGCCTTCTTAAAGCCTCACCTCCAGCCCT
CTCTACAGCCACACAACCCATGCGAGTGGCTGTCCAGGGTCTTCATAGAGCAGGACGATGACATGCTGGA
GGCTGCCAAAGCCTCCCTGAGCATCTACCTCCAGCTGACCAGAGAGTGGGATGCTTCGGCAAGTCTGACC
CAAGAAAAGGAAGCATGGATCCGCTCCACACATGGACATGGCTGTAACCCTCACTGTGTTTTCTTATTCT
TCTTGAAGAATGTAGCATTCGATTCTACTGTTCTTCTCGACTTCTTGATATCCTCAGAGACCTGTTTCCT
TGAATATTTTGTTAAATATTTAAAACTGCTGCAGAAAGACTGGGCCCACTTTCTGTCCATCTGCAAGTTC
TTTGCTGCAGTGGAATCACAATGTGGAATGCTTGTTCATGATCCTGTCCCCTCACCTGCCCGTGGCAGAA
GCACCAGCCTCACAGTGCCTCATGCTCCGGCTTCTCCAGTTGGAGAGAACACTTGCCCCTGGCTCCCCTG
GGCTTCTGATGCCTCCTCCGAATCCCAGAGCCAGGTCATGATGCCCAAGGAAACTCTCCCAGTGCCAGCT
AATGGCCCACCTTCCCGGACACCGCAGAGTCTGGTAGATTATGACAGCTCCGAAGCTTCTGAGGAGGAAA
CCACAAGTGAGCATTTAGCAAACAGCAAACAGACATCTTTATGTCAAGAAAGGTCTGAGGAGATCCAGGG
CCTGCCTAGGACATGGGAGGAGCAAAAGGAACATAGCCTGGAGCCTTTGCTCTCTGCAGAGTCCAGTTCT
CCCTTCTCTGCCAAGGGTAGAGTTGCTGCAGACGGGACTGTCTGGCAAGTGGGATTGTTTCTTCGTACAG
TGAAATGCCTTGAGGAGCTACAGGGAGCAATTTACCGTTTGCAGGAGAAAAATCTCTTTCCATATAACCC
AGCGGCACTTCTGAAGTTGTTGAAAGGTGTGGAGGCCAAGTGTGTTAACGTCTGA

Translation (764 aa):
MRYILDIKMEIVQEILDQLYRKVLLGTTLEDDVHGYIFYLNPDLSEQDGCPAFPVAQSNASGVLDGMAGQ
HGPSSHEVATLPGAQECPKRQLQMDRTREMKLLQLTVIDTMLSQVLSDETETHAKEGYRELTEVLLQSVE
LDSKLMRMLQNSDKLLSHMAAKCLASLLYFQLREKVRSQHKMLSNSWVTFCQKHLSESSESGEAVRCLWI
LTAVIKEILKDTHSQRAESLKQLLTPFDITFEVFYNSLFSQHFGDFQSPSNLASSLMCFLELLELLVASR
IHLKLHFRSQRMLFLKPHALDILAWPIPAFIKRKLVILVKKCLLCKVGEDLCREPAPSLMSPDHLLDSDM
LTLADTLLHAVHVGLWKALAVSGKPSCFGGDEVQPGCRLRTGPDHVTLRAASLITVKSLEIKSQNCTSAA
EMKVALQTFMSELLAFLKPHLQPSLQPHNPCEWLSRVFIEQDDDMLEAAKASLSIYLQLTREWDASASLT
QEKEAWIRSTHGHGCNPHCVFLFFLKNVAFDSTVLLDFLISSETCFLEYFVKYLKLLQKDWAHFLSICKF
FAAVESQCGMLVHDPVPSPARGRSTSLTVPHAPASPVGENTCPWLPWASDASSESQSQVMMPKETLPVPA
NGPPSRTPQSLVDYDSSEASEEETTSEHLANSKQTSLCQERSEEIQGLPRTWEEQKEHSLEPLLSAESSS
PFSAKGRVAADGTVWQVGLFLRTVKCLEELQGAIYRLQEKNLFPYNPAALLKLLKGVEAKCVNV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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