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Report for CCDS13003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13003.1 Public Homo sapiens 20 CSNK2A1 24 110 108 CCDS HistoryNCBI Gene:1457Re-query CCDS DB by CCDS ID:13003.1Re-query CCDS DB by GeneID:1457See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217244.9 ENSP00000217244.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217244.9Link to Ensembl Protein Viewer:ENSP00000217244.3Re-query CCDS DB by Nucleotide ID:ENST00000217244Re-query CCDS DB by Protein ID:ENSP00000217244
Original member Current member EBI ENST00000400217.7 ENSP00000383076.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400217.7Link to Ensembl Protein Viewer:ENSP00000383076.2Re-query CCDS DB by Nucleotide ID:ENST00000400217Re-query CCDS DB by Protein ID:ENSP00000383076
Original member Current member EBI ENST00000643660.1 ENSP00000495248.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643660.1Link to Ensembl Protein Viewer:ENSP00000495248.1Re-query CCDS DB by Nucleotide ID:ENST00000643660Re-query CCDS DB by Protein ID:ENSP00000495248
Original member Current member EBI ENST00000646814.1 ENSP00000495422.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646814.1Link to Ensembl Protein Viewer:ENSP00000495422.1Re-query CCDS DB by Nucleotide ID:ENST00000646814Re-query CCDS DB by Protein ID:ENSP00000495422
Original member Current member EBI ENST00000646305.1 ENSP00000495902.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646305.1Link to Ensembl Protein Viewer:ENSP00000495902.1Re-query CCDS DB by Nucleotide ID:ENST00000646305Re-query CCDS DB by Protein ID:ENSP00000495902
Original member Current member EBI ENST00000647348.1 ENSP00000495912.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647348.1Link to Ensembl Protein Viewer:ENSP00000495912.1Re-query CCDS DB by Nucleotide ID:ENST00000647348Re-query CCDS DB by Protein ID:ENSP00000495912
Original member Current member EBI ENST00000645623.1 ENSP00000495998.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645623.1Link to Ensembl Protein Viewer:ENSP00000495998.1Re-query CCDS DB by Nucleotide ID:ENST00000645623Re-query CCDS DB by Protein ID:ENSP00000495998
Original member Current member EBI ENST00000646561.1 ENSP00000496569.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646561.1Link to Ensembl Protein Viewer:ENSP00000496569.1Re-query CCDS DB by Nucleotide ID:ENST00000646561Re-query CCDS DB by Protein ID:ENSP00000496569
Original member Current member NCBI NM_001362770.2 NP_001349699.1 Accepted alive Link to Nucleotide Sequence:NM_001362770.2Link to Protein Sequence:NP_001349699.1Re-query CCDS DB by Nucleotide ID:NM_001362770Re-query CCDS DB by Protein ID:NP_001349699Link to BLAST:NP_001349699.1
Original member Current member NCBI NM_001362771.2 NP_001349700.1 Accepted alive Link to Nucleotide Sequence:NM_001362771.2Link to Protein Sequence:NP_001349700.1Re-query CCDS DB by Nucleotide ID:NM_001362771Re-query CCDS DB by Protein ID:NP_001349700Link to BLAST:NP_001349700.1
Original member Current member NCBI NM_001895.4 NP_001886.1 Accepted alive Link to Nucleotide Sequence:NM_001895.4Link to Protein Sequence:NP_001886.1Re-query CCDS DB by Nucleotide ID:NM_001895Re-query CCDS DB by Protein ID:NP_001886Link to BLAST:NP_001886.1
Original member Current member NCBI NM_177559.3 NP_808227.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_177559.3Link to Protein Sequence:NP_808227.1Re-query CCDS DB by Nucleotide ID:NM_177559Re-query CCDS DB by Protein ID:NP_808227Link to BLAST:NP_808227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349699.1 391 P68400-1 391 100% 0 0
NP_001349700.1 391 P68400-1 391 100% 0 0
NP_001886.1 391 P68400-1 391 100% 0 0
NP_808227.1 391 P68400-1 391 100% 0 0

Chromosomal Locations for CCDS 13003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 483961 484076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 486376 486462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 487427 487575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 488678 488778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 489780 489881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 492254 492364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 495719 495802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 497721 497780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 499255 499305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 499833 499934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 505118 505229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 508451 508551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGTCGGGACCCGTGCCAAGCAGGGCCAGAGTTTACACAGATGTTAATACACACAGACCTCGAGAATACT
GGGATTACGAGTCACATGTGGTGGAATGGGGAAATCAAGATGACTACCAGCTGGTTCGAAAATTAGGCCG
AGGTAAATACAGTGAAGTATTTGAAGCCATCAACATCACAAATAATGAAAAAGTTGTTGTTAAAATTCTC
AAGCCAGTAAAAAAGAAGAAAATTAAGCGTGAAATAAAGATTTTGGAGAATTTGAGAGGAGGTCCCAACA
TCATCACACTGGCAGACATTGTAAAAGACCCTGTGTCACGAACCCCCGCCTTGGTTTTTGAACACGTAAA
CAACACAGACTTCAAGCAATTGTACCAGACGTTAACAGACTATGATATTCGATTTTACATGTATGAGATT
CTGAAGGCCCTGGATTATTGTCACAGCATGGGAATTATGCACAGAGATGTCAAGCCCCATAATGTCATGA
TTGATCATGAGCACAGAAAGCTACGACTAATAGACTGGGGTTTGGCTGAGTTTTATCATCCTGGCCAAGA
ATATAATGTCCGAGTTGCTTCCCGATACTTCAAAGGTCCTGAGCTACTTGTAGACTATCAGATGTACGAT
TATAGTTTGGATATGTGGAGTTTGGGTTGTATGCTGGCAAGTATGATCTTTCGGAAGGAGCCATTTTTCC
ATGGACATGACAATTATGATCAGTTGGTGAGGATAGCCAAGGTTCTGGGGACAGAAGATTTATATGACTA
TATTGACAAATACAACATTGAATTAGATCCACGTTTCAATGATATCTTGGGCAGACACTCTCGAAAGCGA
TGGGAACGCTTTGTCCACAGTGAAAATCAGCACCTTGTCAGCCCTGAGGCCTTGGATTTCCTGGACAAAC
TGCTGCGATATGACCACCAGTCACGGCTTACTGCAAGAGAGGCAATGGAGCACCCCTATTTCTACACTGT
TGTGAAGGACCAGGCTCGAATGGGTTCATCTAGCATGCCAGGGGGCAGTACGCCCGTCAGCAGCGCCAAT
ATGATGTCAGGGATTTCTTCAGTGCCAACCCCTTCACCCCTTGGACCTCTGGCAGGCTCACCAGTGATTG
CTGCTGCCAACCCCCTTGGGATGCCTGTTCCAGCTGCCGCTGGCGCTCAGCAGTAA

Translation (391 aa):
MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL
KPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEI
LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD
YSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKR
WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSSSMPGGSTPVSSAN
MMSGISSVPTPSPLGPLAGSPVIAAANPLGMPVPAAAGAQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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