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Report for CCDS24923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24923.1 Public Mus musculus 11 Eif5a 23 108 98 CCDS HistoryNCBI Gene:276770Re-query CCDS DB by CCDS ID:24923.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043419.9 ENSMUSP00000047008.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043419.9Link to Ensembl Protein Viewer:ENSMUSP00000047008.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043419Re-query CCDS DB by Protein ID:ENSMUSP00000047008
Original member Current member EBI ENSMUST00000070996.10 ENSMUSP00000067077.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070996.10Link to Ensembl Protein Viewer:ENSMUSP00000067077.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070996Re-query CCDS DB by Protein ID:ENSMUSP00000067077
Original member Current member EBI ENSMUST00000071026.9 ENSMUSP00000068651.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071026.9Link to Ensembl Protein Viewer:ENSMUSP00000068651.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071026Re-query CCDS DB by Protein ID:ENSMUSP00000068651
Original member Current member EBI ENSMUST00000108607.7 ENSMUSP00000104247.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108607.7Link to Ensembl Protein Viewer:ENSMUSP00000104247.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108607Re-query CCDS DB by Protein ID:ENSMUSP00000104247
Original member Current member EBI ENSMUST00000108608.7 ENSMUSP00000104248.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108608.7Link to Ensembl Protein Viewer:ENSMUSP00000104248.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108608Re-query CCDS DB by Protein ID:ENSMUSP00000104248
Original member Current member EBI ENSMUST00000108609.7 ENSMUSP00000104249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108609.7Link to Ensembl Protein Viewer:ENSMUSP00000104249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108609Re-query CCDS DB by Protein ID:ENSMUSP00000104249
Original member Current member EBI ENSMUST00000108610.7 ENSMUSP00000104250.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108610.7Link to Ensembl Protein Viewer:ENSMUSP00000104250.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108610Re-query CCDS DB by Protein ID:ENSMUSP00000104250
Original member Current member EBI ENSMUST00000108611.7 ENSMUSP00000104251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108611.7Link to Ensembl Protein Viewer:ENSMUSP00000104251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108611Re-query CCDS DB by Protein ID:ENSMUSP00000104251
Original member Current member EBI ENSMUST00000108612.7 ENSMUSP00000104252.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108612.7Link to Ensembl Protein Viewer:ENSMUSP00000104252.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108612Re-query CCDS DB by Protein ID:ENSMUSP00000104252
Original member Current member EBI ENSMUST00000108613.9 ENSMUSP00000104253.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108613.9Link to Ensembl Protein Viewer:ENSMUSP00000104253.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108613Re-query CCDS DB by Protein ID:ENSMUSP00000104253
Original member Current member EBI ENSMUST00000164359.7 ENSMUSP00000132717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164359.7Link to Ensembl Protein Viewer:ENSMUSP00000132717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164359Re-query CCDS DB by Protein ID:ENSMUSP00000132717
Original member Current member NCBI NM_001166589.1 NP_001160061.1 Accepted alive Link to Nucleotide Sequence:NM_001166589.1Link to Protein Sequence:NP_001160061.1Re-query CCDS DB by Nucleotide ID:NM_001166589Re-query CCDS DB by Protein ID:NP_001160061Link to BLAST:NP_001160061.1
Original member Current member NCBI NM_001166590.1 NP_001160062.1 Accepted alive Link to Nucleotide Sequence:NM_001166590.1Link to Protein Sequence:NP_001160062.1Re-query CCDS DB by Nucleotide ID:NM_001166590Re-query CCDS DB by Protein ID:NP_001160062Link to BLAST:NP_001160062.1
Original member Current member NCBI NM_001166591.1 NP_001160063.1 Accepted alive Link to Nucleotide Sequence:NM_001166591.1Link to Protein Sequence:NP_001160063.1Re-query CCDS DB by Nucleotide ID:NM_001166591Re-query CCDS DB by Protein ID:NP_001160063Link to BLAST:NP_001160063.1
Original member Current member NCBI NM_001166592.1 NP_001160064.1 Accepted alive Link to Nucleotide Sequence:NM_001166592.1Link to Protein Sequence:NP_001160064.1Re-query CCDS DB by Nucleotide ID:NM_001166592Re-query CCDS DB by Protein ID:NP_001160064Link to BLAST:NP_001160064.1
Original member Current member NCBI NM_001166593.1 NP_001160065.1 Accepted alive Link to Nucleotide Sequence:NM_001166593.1Link to Protein Sequence:NP_001160065.1Re-query CCDS DB by Nucleotide ID:NM_001166593Re-query CCDS DB by Protein ID:NP_001160065Link to BLAST:NP_001160065.1
Original member Current member NCBI NM_001166594.1 NP_001160066.1 Accepted alive Link to Nucleotide Sequence:NM_001166594.1Link to Protein Sequence:NP_001160066.1Re-query CCDS DB by Nucleotide ID:NM_001166594Re-query CCDS DB by Protein ID:NP_001160066Link to BLAST:NP_001160066.1
Original member Current member NCBI NM_001166595.1 NP_001160067.1 Accepted alive Link to Nucleotide Sequence:NM_001166595.1Link to Protein Sequence:NP_001160067.1Re-query CCDS DB by Nucleotide ID:NM_001166595Re-query CCDS DB by Protein ID:NP_001160067Link to BLAST:NP_001160067.1
Original member Current member NCBI NM_001166596.1 NP_001160068.1 Accepted alive Link to Nucleotide Sequence:NM_001166596.1Link to Protein Sequence:NP_001160068.1Re-query CCDS DB by Nucleotide ID:NM_001166596Re-query CCDS DB by Protein ID:NP_001160068Link to BLAST:NP_001160068.1
Original member Current member NCBI NM_181582.4 NP_853613.1 Accepted alive Link to Nucleotide Sequence:NM_181582.4Link to Protein Sequence:NP_853613.1Re-query CCDS DB by Nucleotide ID:NM_181582Re-query CCDS DB by Protein ID:NP_853613Link to BLAST:NP_853613.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160061.1 154 P63242 154 100% 0 0
NP_001160062.1 154 P63242 154 100% 0 0
NP_001160063.1 154 P63242 154 100% 0 0
NP_001160064.1 154 P63242 154 100% 0 0
NP_001160065.1 154 P63242 154 100% 0 0
NP_001160066.1 154 P63242 154 100% 0 0
NP_001160067.1 154 P63242 154 100% 0 0
NP_001160068.1 154 P63242 154 100% 0 0
NP_853613.1 154 P63242 154 100% 0 0

Chromosomal Locations for CCDS 24923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69917439 69917501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69917597 69917728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69917917 69918021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69919151 69919315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCAGATGATTTGGACTTCGAGACAGGAGATGCAGGGGCCTCAGCCACCTTCCCAATGCAGTGCTCAG
CATTACGTAAGAATGGTTTTGTGGTGCTCAAAGGCCGGCCATGTAAGATCGTCGAGATGTCTACTTCGAA
GACTGGCAAGCATGGCCATGCCAAGGTCCATCTGGTTGGCATTGACATTTTTACTGGGAAGAAATATGAA
GATATCTGCCCGTCAACTCATAATATGGATGTCCCCAACATCAAACGGAATGACTTCCAGCTGATTGGCA
TCCAGGATGGGTACCTATCCCTGCTCCAGGACAGTGGGGAGGTACGAGAGGACCTTCGTCTGCCTGAAGG
AGACCTTGGCAAGGAGATTGAGCAGAAGTATGACTGTGGAGAAGAGATCCTGATCACAGTGCTGTCTGCC
ATGACAGAGGAGGCAGCTGTTGCAATCAAGGCCATGGCAAAATAA

Translation (154 aa):
MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYE
DICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSA
MTEEAAVAIKAMAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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