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Report for CCDS36930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36930.1 Public Mus musculus 14 Carmil3 23 108 98 CCDS HistoryNCBI Gene:268747Re-query CCDS DB by CCDS ID:36930.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 36930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076236.6 ENSMUSP00000075587.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076236.6Link to Ensembl Protein Viewer:ENSMUSP00000075587.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076236Re-query CCDS DB by Protein ID:ENSMUSP00000075587
Original member Current member NCBI NM_001024645.2 NP_001019816.1 Accepted alive Link to Nucleotide Sequence:NM_001024645.2Link to Protein Sequence:NP_001019816.1Re-query CCDS DB by Nucleotide ID:NM_001024645Re-query CCDS DB by Protein ID:NP_001019816Link to BLAST:NP_001019816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019816.1 1375 Q3UFQ8 1375 100% 0 0

Chromosomal Locations for CCDS 36930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 55491244 55491283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55492872 55492966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55493220 55493270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55493378 55493437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55493524 55493639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55493828 55493925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55494179 55494249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55494348 55494421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55494653 55494728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55494805 55494893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55495404 55495498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55495724 55495810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55495981 55496090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55496225 55496302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55496787 55496863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55496941 55497045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55497138 55497207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55497664 55497745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55497846 55497942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55498088 55498142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55498219 55498391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55498602 55498670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55498848 55498941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55499043 55499141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55499458 55499586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55499752 55499865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55500293 55500468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55501232 55501319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55501459 55501593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55501830 55501893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55502225 55502433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55502931 55503031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55503837 55504152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55504468 55504599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55505400 55505466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55505570 55505659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55507118 55507236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55507377 55507557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55507685 55507804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 55507920 55507945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4128 nt):
ATGGCCAAGGCCAGCGTGGAGCTCACCCGCGAGCTGCAAGACAGCATCCGGAGGTGCCTGAGCCAGGGGG
CTGTGCTCCAGCAACATCGTGTGAAACTGGAGACAAAACCCAAGAAGTTCGAAGACAGAGTGCTGGCCCT
GACTTCCTGGCGTCTCCACCTTTTTCCCCTTAAAGTTCCAGCTAAGGTGGAAAGCTCATTCAATGTCCTG
GAGATCCGTGCCTTCAACACACTCAGTCAGAATCAGATCCTGGTGGAGACTGAGCGTGGCACGGTGAGCA
TGCGGCTGCCATCCGCCGAGAGTGTGGACCAGGTGACACGGCATGTGAGCTCTGCCCTCTCCAAGGTCTG
CCCTGGCCCTGGGTGTTTGATCCGGCGTGGAAATGCGGACACCCCAGAGGGACCCCGAGACACATCTCCC
AACTCGGAAACTTCCACATCTACCACTCACAGTGTGTGTGGTGGCTTCTCTGAGACCTACGCTGCCCTGT
GTGACTACAATGGACTCCACTGCCGAGAGGAGGTGCAATGGGATGTGGACACCATCTACCATGCTGAGGA
TAACCGAGAGTTCAATCTTTTGGATTTCAGCCACTTGGAGAGCCGAGATCTGGCCCTCATGGTGGCCGCC
CTGGCCTACAACCAGTGGTTCACCAAACTCTACTGCAAAGACTTGAGACTGGGCTCAGAAGTGCTAGAAC
AGGTGCTACATACCCTCAGCAAGTCGGGGAGCCTCGAAGAGCTGGTGCTGGACAATGCTGGGCTTAAGAC
GGACTTTGTCCAGAAGCTGGCCGGGGTGTTTGGGGAGAACGGGAGCTGTGTGCTGCATGCGCTCATTCTG
TCCCACAACCCCATCGAGGACAAGGGTTTCCTCAGCCTGAGCCAGCAGCTCCTCTGCTTCCCTACGGGCC
TCACCAAACTGTGCCTGGCCAAGACTGCCATCTCTCCTCGAGGGCTCCAGGCACTGGGCCAGACCTTCGG
GGCCAACCCAGCCTTTGCCAGCTCCCTCCGATACCTGGACCTGAGCAAGAACCCAGGGCTGCTTGCCACA
GACGAGGCCAATGCCCTCTATAGTTTCCTGGCCCAACCCAACGCCTTGGTACACCTGGACCTTTCAGGGA
CTGACTGTGCCGTTGACATGCTTCTGGGCGCCCTCCTTCATGGCTGCTGCTCTCACCTCACCTACCTCAA
CCTGGCTCGAAACAGCTGCTCCCACAGGAAGGGCCGGGAGGCCCCGCCAGCCTTCAAGCAATTCTTCAGC
AGCGTCTACACCCTGAGCCATGTCAACCTGTCAGCCACAAGGCTGCCCCTGGAGGCCCTCAGGGCACTTC
TTCAGGGCCTCTCCCTCAACAGTCACCTCAGTGATCTGCACCTGGACCTTAGCAGCTGTGAGCTCCGCTC
AGCAGGAGCCCAGGCCTTGCAGGAGCAGCTGGGGGCTGTCACCTGTATAGGCAGCCTAGATCTGTCTGAT
AATGGGTTTGACTCAGACCTCCTGACGCTGGTGCCTGCACTTGGCAAGAACAAGTCCCTCAAGCACCTAT
TCCTAGGAAAGAACTTCAATGTCAAGGCCAAGACTTTGGAAGAGATCCTGCATAAGCTGGTGCAGTTGAT
CCAAGAAGAGGACTGTTCCCTGCAGTCGCTGTCCGTGGCAGACTCCAGGCTGAAGCTTCGCACCAGCATC
CTTATCAATGCCCTGGGCAGCAACACGTGCCTGGCCAAGGTGGATCTGAGTGGCAACGGCATGGAGGACA
TCGGGGCCAAGATGCTGTCGAAGGCGCTGCAGATAAATTCTTCCCTCAGAACTATACTATGGGATCGGAA
CAATACGTCTGCCCTGGGCTTCCTGGACATTGCAAGGGCCCTGGAGAGCAACCATACACTGCGCTTCATG
TCCTTCCCTGTGAGCGACATCTCTCAAGCTTACCGCAGTGCCCCTGAGCGCACCGAGGATGTGTGGCAGA
AGATCCAGTGGTGCCTGGTGAGGAACAACCACTCCCAGACATGCCCTCAGGAGCAAGCCTTCAGGCTGCA
GCAGGGCCTGGTGACCAGCAGCGCCGAGCAAATGCTGCAGCGGCTGTGTGGACGAGTGCAGGAGGAGGTG
CGGGCCCTGAGACTATGTCCCCTGGAGCCAGTGCAAGATGAGCTGCTCTATGCCCGGGACCTCATCAAGG
ACGCCAAGAACTCCCGGGCGCTCTTTCCCAGCCTCTATGAGCTGGGTCACGTGTTGGCCAACGATGGGCC
TGTGCGGCAGAGACTAGAGTCGGTAGCCAGTGAGGTATCCAAAGCTGTGGACAAGGAGCTTCAGGTGATT
CTGGAATCCATGGTCAGCCTAACACAGGAACTGTGCCCTGTGGCCATGCGGGTGGCAGAAGGACACAACA
AGATGCTGAGCAACGTGGCAGAACGTGTCACTGTGCCCCGGAACTTCATCCGCGGAGCGCTGCTGGAGCA
GGCGGGACAGGACATTCAGAACAAGCTGGACGAGGTGAAGCTGTCCGTCGTCACCTACCTGACCAACTCC
ATAGTGGATGAGATCCTCCAGGAGCTGTATCACTCCCACAAGAGCCTGGCCCGGCACCTGACCCAGCTGA
GGACACTGTCGGATCCACCCGGAGGGGCAAGCCAAGGGCAGGATCCATCTTCCCGAGGCAGAGGCAGGAA
CCATGACCACGAGGAAACGGATGATGAGCTTGGGACCAACATCGACACTATGGCCATCAAAAAGCAGAAA
CGCTGCCGGAAGATCCGGCCAGTGTCTGCCTTCATCAGTGGGAGCCCTCAGGACATGGAAAGCCAACTGG
GAAGTTTGGGGATCCCTCCTGGATGGTTCTCAGGACTTGGAGCCAGCCAGACCACAGCAAGTGGCTCCTG
GGAAGGCCTATCTGAGCTACCTACCCATGGCTATAAACTAAGGCATCAAACACAAGGGAGGCCTAGGCCT
CCCAGGACCACTCCCCCAGGACCTGGCCGGCCCAGTGTGCCAGTGCCTGGGCCTCGTCAGGAGAATGGGA
TGGCCACCCGTCTAGATGAGGGGCTGGAAGACTTCTTCAGCAGAAGGGTCATGGACGAAAGCTCCAGCTA
CCCCCGGACTCTGAGGACCATGCGACCAGGCCTCTCAGAGCCACCGCTGCCTCCACTCCAGAAGAAGAGG
AGGCGAGGCCTGTTTCACTTCCGCCGGCCCCGGAGCTTCAAGGGGGACAGGGGACCAGGTTCCCCCACTG
CTGGACTCCTCCTCCCTCCACCCCCACCCCCACCCCCAACTCAGGAGAGCCCTCCCAGCCCAGACCCCCC
AAGCCTTGGCAATAACTCATCTCCTTGTTGGAGCCCAGAGGAGGAGAGCAGCCTCCTTCCTGGATTTGGA
GGGGCCCGAGGATCTTCCTTCTGCAGGAAGATGGGCACAGAGAGGTTGGAGGCAGGAGAGGGAGCCCCAG
CCCCTGGGACAGCGCAGCAACCAAGGGTGCACGGTGGCGTTGCCCTTCCTGGCTTGGGAAGAACCAAAGG
GTGGAGCTTTGATGGAAAACGAGAGGGCACAGACCCAGACCAGGAGGACAGTACCCAGGCTTGGCAGAAA
CGGCGCTCTTCAGATGATGCAGGGCCTGGAGCCTGGAAGCCACCACCGCCCCCACAAAGCTCCAAGCCAA
GCTTCAGCGCCATGCGCCGAGCAGAGGCCACGTGGCACATAGCTGAGGAGAGTGCCGCAAACCACAGCTG
CCAAAGCCCTAGCCCAGCTTCCCAGGATGGAGACGAGGAAAAGCAGGGCGCCTTATTCCCAGAGAGAATG
GTTCCCACTAGGAATGCCAAGCTACAGGAGCCCCCCATAGGTCCACGTCCCCCTAAGCCAGTGGCTGTGC
CCAGGGGCCGCAGGGCCCCCCAGGTGCCAGGAGGCAGAGAAGAGACTGAGAGCAGCAGTGCTGCCCCAGG
AGCCAACAAACCCCGGCTGAGACTGGGCTCACAGCAAGACCAAGAGGAGCCAGAAGGACAAGGACCCACT
GATCAGGGCCGCAGGACAGCGCCCCTGAAACCCAAGAGAACACGGCGAGCACAGTCCTGTGACAAACTGG
AACCCGATAGGAGACAACCACCTGACCCTACAGGTGTCTGTGGAACCAGTGAACCAGGAACAGACTGA

Translation (1375 aa):
MAKASVELTRELQDSIRRCLSQGAVLQQHRVKLETKPKKFEDRVLALTSWRLHLFPLKVPAKVESSFNVL
EIRAFNTLSQNQILVETERGTVSMRLPSAESVDQVTRHVSSALSKVCPGPGCLIRRGNADTPEGPRDTSP
NSETSTSTTHSVCGGFSETYAALCDYNGLHCREEVQWDVDTIYHAEDNREFNLLDFSHLESRDLALMVAA
LAYNQWFTKLYCKDLRLGSEVLEQVLHTLSKSGSLEELVLDNAGLKTDFVQKLAGVFGENGSCVLHALIL
SHNPIEDKGFLSLSQQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPAFASSLRYLDLSKNPGLLAT
DEANALYSFLAQPNALVHLDLSGTDCAVDMLLGALLHGCCSHLTYLNLARNSCSHRKGREAPPAFKQFFS
SVYTLSHVNLSATRLPLEALRALLQGLSLNSHLSDLHLDLSSCELRSAGAQALQEQLGAVTCIGSLDLSD
NGFDSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEILHKLVQLIQEEDCSLQSLSVADSRLKLRTSI
LINALGSNTCLAKVDLSGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFM
SFPVSDISQAYRSAPERTEDVWQKIQWCLVRNNHSQTCPQEQAFRLQQGLVTSSAEQMLQRLCGRVQEEV
RALRLCPLEPVQDELLYARDLIKDAKNSRALFPSLYELGHVLANDGPVRQRLESVASEVSKAVDKELQVI
LESMVSLTQELCPVAMRVAEGHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNS
IVDEILQELYHSHKSLARHLTQLRTLSDPPGGASQGQDPSSRGRGRNHDHEETDDELGTNIDTMAIKKQK
RCRKIRPVSAFISGSPQDMESQLGSLGIPPGWFSGLGASQTTASGSWEGLSELPTHGYKLRHQTQGRPRP
PRTTPPGPGRPSVPVPGPRQENGMATRLDEGLEDFFSRRVMDESSSYPRTLRTMRPGLSEPPLPPLQKKR
RRGLFHFRRPRSFKGDRGPGSPTAGLLLPPPPPPPPTQESPPSPDPPSLGNNSSPCWSPEEESSLLPGFG
GARGSSFCRKMGTERLEAGEGAPAPGTAQQPRVHGGVALPGLGRTKGWSFDGKREGTDPDQEDSTQAWQK
RRSSDDAGPGAWKPPPPPQSSKPSFSAMRRAEATWHIAEESAANHSCQSPSPASQDGDEEKQGALFPERM
VPTRNAKLQEPPIGPRPPKPVAVPRGRRAPQVPGGREETESSSAAPGANKPRLRLGSQQDQEEPEGQGPT
DQGRRTAPLKPKRTRRAQSCDKLEPDRRQPPDPTGVCGTSEPGTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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