NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48992.1 Public Mus musculus 11 6030468B19Rik 23 108 98 CCDS HistoryNCBI Gene:77727Re-query CCDS DB by CCDS ID:48992.1Re-query CCDS DB by GeneID:77727See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106331.1 ENSMUSP00000101938.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106331.1Link to Ensembl Protein Viewer:ENSMUSP00000101938.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106331Re-query CCDS DB by Protein ID:ENSMUSP00000101938
Original member Current member NCBI NM_029964.1 NP_084240.1 Accepted alive Link to Nucleotide Sequence:NM_029964.1Link to Protein Sequence:NP_084240.1Re-query CCDS DB by Nucleotide ID:NM_029964Re-query CCDS DB by Protein ID:NP_084240Link to BLAST:NP_084240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084240.1 252 Q9CX63 252 100% 0 0

Chromosomal Locations for CCDS 48992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117797767 117797803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117798423 117798455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117802779 117803066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117805814 117806083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117806205 117806328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117807090 117807096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGGCGCTCCTTCAGCTGCTCCTCTTTGCCATGCTGGCTGCCTGTGGCTTCTCAGAGGAGCAGACAGAAG
GCATCACCATTGCCTACAAAGTACTGGAAGTTTATCCCCAAAGCCGGAGGGTGCTTATAACCTGCGATGC
CCCTGAGGCGTCCCAGCCCATCACATACTCTCTCCTGGCTAGCCGAGGTATCCTGGTGGCAAAAAAGGTT
GTGCATGACTCCGTGCCGGCCTCCTTCAACATCAATATCACCATCAAGTCCAGCCCAGACCTGCTCACCT
ACTCCTGCCAGGCAACCTCGAACTCTGGCACCTATGGACCCAGCAGCAGGCTCCAGATGTACCAGGAACT
GTGGGCTAAGCCAGTGTCTCAGCTGCAGGCTGACTTCGTCCTACGCCATGGGGACTCGGGCCCCACTGTG
GAGCTGTCCTGCCTGGCATCCTCAGGCAGCCCCCCCATCACCTACCGCTTGGTGGGGAATGGTGGGCGTG
TTCTTGCACAGCAAAGGCCACTTCATGGAAAACCAGCCAACTTCTCCCTCCCGCTGTCCCAGACCACTGG
TTGGTTCCAGTGCGAAGCTGAAAACGATGTCGGTGTGGACAGCAGTGCCCGCATCCCGCTGCCCCGAGCA
GAGGCCCGAGCCAAGCTGGTGACCACCCTCGCAGGGGAGCTGCCCCTGACACCCACCTGTATTCTGGCTG
GCAGCCTCGTCTCCATAGCCGTTATTGCTTCCAGGATGCTGAGCTCGACCGGGTTGTGA

Translation (252 aa):
MALLQLLLFAMLAACGFSEEQTEGITIAYKVLEVYPQSRRVLITCDAPEASQPITYSLLASRGILVAKKV
VHDSVPASFNINITIKSSPDLLTYSCQATSNSGTYGPSSRLQMYQELWAKPVSQLQADFVLRHGDSGPTV
ELSCLASSGSPPITYRLVGNGGRVLAQQRPLHGKPANFSLPLSQTTGWFQCEAENDVGVDSSARIPLPRA
EARAKLVTTLAGELPLTPTCILAGSLVSIAVIASRMLSSTGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH