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Report for CCDS29670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29670.1 Public Mus musculus 19 Or10q1 23 108 98 CCDS HistoryNCBI Gene:258992Re-query CCDS DB by CCDS ID:29670.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051768.3 ENSMUSP00000056291.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051768.3Link to Ensembl Protein Viewer:ENSMUSP00000056291.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000051768Re-query CCDS DB by Protein ID:ENSMUSP00000056291
Original member Current member EBI ENSMUST00000207836.2 ENSMUSP00000146563.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207836.2Link to Ensembl Protein Viewer:ENSMUSP00000146563.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207836Re-query CCDS DB by Protein ID:ENSMUSP00000146563
Original member Current member NCBI NM_146990.1 NP_667201.1 Accepted alive Link to Nucleotide Sequence:NM_146990.1Link to Protein Sequence:NP_667201.1Re-query CCDS DB by Nucleotide ID:NM_146990Re-query CCDS DB by Protein ID:NP_667201Link to BLAST:NP_667201.1

Chromosomal Locations for CCDS 29670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13749108 13750055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCTGACTGGGAAGTCTGTCCTCAATCAGTCTGGGACCACTGAGTTTGTGTTCCGTGTCTTCACCACTG
TCCCTGAATTCCAGGCTCTTCTCTTCCTCCTCTTCCTCCTGCTGTATTTGATGATCCTCTGTGGTAATGC
AGCCATCATCTGGGTAGTGTGCACACACAGTGCCCTGCACACACCTATGTATTTCTTCCTCAGTAGTCTG
TCTGTCTTGGAAATCTTCTACACCACAGATGTGGTGCCCTTGATGCTTTCTAACATCTTTGGGGCCCAGA
AACCCATATCACTGGCTGGTTGTGGGACACAAATGTTCTTCTTTGTAACTCTAGGAAGCACTGACTGCTT
TCTCTTGGCAGTCATGGCCTATGACAGGTATGTGGCCATCTGCCACCCTCTACACTACAGCCTCATCATG
ACCAAGAAGCTGTGTGTCCAGATGGTGATGGGCTCTTGGAGCTTGGCACTGTTTCTCTCCCTGCAGCTCA
CTGCCTTAATTTTCACCTTGCCCTTCTGTGGACATGACCAGGAAATCAACCACTTTCTCTGTGATGTGCC
TCCAGTCCTGCGCCTAGCCTGTGCTGACATTCATGTGCACCAGGCAGTCCTCTATGTAGTGGGCATCCTG
GTGCTGACAGTCCCATTCCTGCTGATTTGTATCTCATATGTGTTCATTGCTTCTACAATTCTTCGCATGC
GCTCTGCAGAGGGTCGCCAGAGGGCCTTCTCTACCTGCTCCTCCCACCTCACTGTGGTCTTGCTGCAGTA
TGGTTGCTGCAGCCTTGTATATCTGAGGCCCCGCTCCAGCACCTCAGAGGATGAGGATCGCCAAATTGCC
CTGGTCTACACCTTTGTCACGCCATTACTCAATCCTCTGATTTACACCCTTCGGAATAAAGATGTGAAAG
GTGCACTGAAGAACTCCATCTTCCATAAAGCAGTCTGA

Translation (315 aa):
MLTGKSVLNQSGTTEFVFRVFTTVPEFQALLFLLFLLLYLMILCGNAAIIWVVCTHSALHTPMYFFLSSL
SVLEIFYTTDVVPLMLSNIFGAQKPISLAGCGTQMFFFVTLGSTDCFLLAVMAYDRYVAICHPLHYSLIM
TKKLCVQMVMGSWSLALFLSLQLTALIFTLPFCGHDQEINHFLCDVPPVLRLACADIHVHQAVLYVVGIL
VLTVPFLLICISYVFIASTILRMRSAEGRQRAFSTCSSHLTVVLLQYGCCSLVYLRPRSSTSEDEDRQIA
LVYTFVTPLLNPLIYTLRNKDVKGALKNSIFHKAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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