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Report for CCDS50605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50605.1 Public Mus musculus 2 Map3k20 23 108 98 CCDS HistoryNCBI Gene:65964Re-query CCDS DB by CCDS ID:50605.1Re-query CCDS DB by GeneID:65964See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135469.7 ENSMUSP00000118983.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135469.7Link to Ensembl Protein Viewer:ENSMUSP00000118983.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135469Re-query CCDS DB by Protein ID:ENSMUSP00000118983
Original member NCBI NM_001164791.1 NP_001158263.1 Updated not alive Link to Nucleotide Sequence:NM_001164791.1Link to Protein Sequence:NP_001158263.1Re-query CCDS DB by Nucleotide ID:NM_001164791Re-query CCDS DB by Protein ID:NP_001158263
Current member NCBI NM_001164791.2 NP_001158263.1 Accepted alive Link to Nucleotide Sequence:NM_001164791.2Link to Protein Sequence:NP_001158263.1Re-query CCDS DB by Nucleotide ID:NM_001164791Re-query CCDS DB by Protein ID:NP_001158263Link to BLAST:NP_001158263.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158263.1 454 Q9ESL4-2 454 100% 0 0

Chromosomal Locations for CCDS 50605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 72298222 72298380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72355558 72355645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72364628 72364729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72368401 72368466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72371727 72371755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72371871 72372008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72378634 72378720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72384131 72384205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72389470 72389576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72398290 72398425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72401989 72402366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGTCGTCTCTCGGAGCCTCCTTTGTGCAAATTAAGTTCGACGACTTGCAGTTTTTTGAAAACTGCGGTG
GAGGAAGTTTTGGGAGTGTGTATCGAGCCAAATGGATATCACAGGACAAGGAGGTGGCTGTAAAGAAGTT
ACTCAAAATAGAGAAAGAGGCAGAAATCCTGAGCGTCCTCAGTCACAGAAACATCATCCAGTTTTATGGA
GTGATTCTGGAACCTCCCAACTATGGCATCGTCACAGAATATGCTTCCCTGGGCTCCCTGTATGATTACA
TTAACAGCAACAGGAGTGAAGAGATGGACATGGAACACATCATGACCTGGGCCACTGACGTAGCCAAAGG
GATGCATTACTTACACATGGAAGCTCCTGTCAAGGTGATCCACAGAGACCTCAAGTCAAGAAACGTTGTT
ATCGCTGCTGACGGAGTGCTGAAGATCTGTGACTTCGGTGCCTCGCGGTTCCATAACCACACAACACACA
TGTCCTTGGTTGGAACTTTCCCATGGATGGCTCCAGAAGTTATCCAGAGTCTCCCTGTGTCTGAAACCTG
TGACACGTATTCCTATGGTGTGGTTCTCTGGGAGATGCTAACAAGGGAGGTCCCCTTTAAAGGTTTGGAA
GGATTACAAGTAGCTTGGCTTGTAGTGGAAAAAAACGAGAGATTAACCATTCCAAGCAGCTGCCCCAGAA
GCTTTGCTGAACTGCTACACCAGTGTTGGGAGGCTGATGCCAAGAAACGGCCATCGTTCAAGCAAATCAT
TTCAATCCTGGAGTCTATGTCAAATGACACGAACCTTCCTGACCAGTGTAACTCATTTTTACACAACAAG
GCGGAGTGGAGGTGTGAAATTGAGGCAACCCTTGAGCGACTGAAGAAACTAGAGCGAGATCTCAGCTTTA
AAGAGCAGGAGCTCAAAGAACGGGAGAGACGTCTCAAGATGTGGGAGCAGAAGCTGACGGAGCAATCCAA
CACCCCGCTTCTCTTGCCTCTCTCTGCAAGAATGTCTGAGGAGTCTTACTTTGAATCTAAAACAGAGGAG
TCAAACAGTGCAGAGATGTCATGCCAGATCACTGCAGCAAGTAACGGGGAGGGCCATGGCATGAACCCAG
GCCTGCAGGCCATGATGCTCATGGGCTTTGGGGATGTCTTCTCAATGAACAAAGCAGGAGCTGTGCTGCA
TTCTGGGATGCAGATAAACATGCAAGCCAAGCAGAATTCATCCAAAACCACATGTAAGAGGAGAGGGAAG
AAAGTCAACATGGCCCTGGGGTTCAGTGACTTTGACCTGTCAGAAGGTGACGATGATGACCATGATGGTG
ACGATGCTGAGAATGATGTGGATAATAGTGAATGA

Translation (454 aa):
MSSLGASFVQIKFDDLQFFENCGGGSFGSVYRAKWISQDKEVAVKKLLKIEKEAEILSVLSHRNIIQFYG
VILEPPNYGIVTEYASLGSLYDYINSNRSEEMDMEHIMTWATDVAKGMHYLHMEAPVKVIHRDLKSRNVV
IAADGVLKICDFGASRFHNHTTHMSLVGTFPWMAPEVIQSLPVSETCDTYSYGVVLWEMLTREVPFKGLE
GLQVAWLVVEKNERLTIPSSCPRSFAELLHQCWEADAKKRPSFKQIISILESMSNDTNLPDQCNSFLHNK
AEWRCEIEATLERLKKLERDLSFKEQELKERERRLKMWEQKLTEQSNTPLLLPLSARMSEESYFESKTEE
SNSAEMSCQITAASNGEGHGMNPGLQAMMLMGFGDVFSMNKAGAVLHSGMQINMQAKQNSSKTTCKRRGK
KVNMALGFSDFDLSEGDDDDHDGDDAENDVDNSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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