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Report for CCDS16543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16543.1 Public Mus musculus 2 Or4f60 23 108 98 CCDS HistoryNCBI Gene:258257Re-query CCDS DB by CCDS ID:16543.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099599.4 ENSMUSP00000097194.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099599.4Link to Ensembl Protein Viewer:ENSMUSP00000097194.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099599Re-query CCDS DB by Protein ID:ENSMUSP00000097194
Original member Current member EBI ENSMUST00000216071.1 ENSMUSP00000148886.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216071.1Link to Ensembl Protein Viewer:ENSMUSP00000148886.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216071Re-query CCDS DB by Protein ID:ENSMUSP00000148886
Original member Current member EBI ENSMUST00000213577.1 ENSMUSP00000149681.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213577.1Link to Ensembl Protein Viewer:ENSMUSP00000149681.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213577Re-query CCDS DB by Protein ID:ENSMUSP00000149681
Original member Current member NCBI NM_207150.2 NP_997033.1 Accepted alive Link to Nucleotide Sequence:NM_207150.2Link to Protein Sequence:NP_997033.1Re-query CCDS DB by Nucleotide ID:NM_207150Re-query CCDS DB by Protein ID:NP_997033Link to BLAST:NP_997033.1

Chromosomal Locations for CCDS 16543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112071646 112072581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGAAGAGGGTGAATCATTCTGTGACATCAGAGTTTGTGTTCCTGGGACTCACAAACTCCTGGAATATCC
AACTGCTGCTCTTTCTGTTATCCTCAGTGTTGTATGTGGCAAGCATGATGGGAAACTGTCTCATAATTTT
CACTGTGGCTTCTGACCCTCAGCTACATTCTCCTATGTACTTTCTTCTGTCTAACCTCTCCTTCATTGAT
ATAGGTATTTCTTCTGCCACTTCACCCAAGATGATTTATGACTTATTCAAAAAGAACAAAGTCATCTCCT
TTAGAGGTTGTATTATTCAAATCTTCTTCATCCATGCAATTGGGGGTGTGGAGATGGTGCTACTCATTGC
CATGGCCTTTGATAGATATGTGGCCATATGTAAGCCTCTTCATTACCTGACCATGATGAGCCCCCAGATG
TGCATCTTCTTTTTAATTACTGCCTGGGTAGTTGGTCTTATGCACTCTGTGATACAACTGGTTTTCATAG
TAAATTTACCTCTCTGTGGTCAGCTATTGGACAGCTTCTACTGTGACCTTCCTCAATTCATCAAACTTGC
TTGCATGGACACATATAGACTGGAATTAATGGTCTCAATCAGTAGTGGATTCATGTCTGTGGCTTTCTTC
TTCATACTGATCATTTCCTATGTTGTCATCATATTTACTGTTCTGAAACACTCTTCAAGTGGTTCCTACA
AAGCGCTGTCTACACTTTCAGCTCACGTGACTGTAGTAGTCTTATTCTTTGGTCCTGCCATATTTTTCTA
TACATGGCCTTCTTCCTCTACACACCTGGATAAGTTTCTGGCCCTATTTGATGCAGTTGTTACTCCCTTT
TTGAACCCTGTGATCTACACATTGAGGAATCAAGAAATGAAGATGGCAATGAGGAGAGTATTCAGACATC
TAATGGGCTATAGACAAATCTCTTGA

Translation (311 aa):
MKRVNHSVTSEFVFLGLTNSWNIQLLLFLLSSVLYVASMMGNCLIIFTVASDPQLHSPMYFLLSNLSFID
IGISSATSPKMIYDLFKKNKVISFRGCIIQIFFIHAIGGVEMVLLIAMAFDRYVAICKPLHYLTMMSPQM
CIFFLITAWVVGLMHSVIQLVFIVNLPLCGQLLDSFYCDLPQFIKLACMDTYRLELMVSISSGFMSVAFF
FILIISYVVIIFTVLKHSSSGSYKALSTLSAHVTVVVLFFGPAIFFYTWPSSSTHLDKFLALFDAVVTPF
LNPVIYTLRNQEMKMAMRRVFRHLMGYRQIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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