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Report for CCDS37336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37336.1 Public Mus musculus 16 Hcls1 23 108 98 CCDS HistoryNCBI Gene:15163Re-query CCDS DB by CCDS ID:37336.1Re-query CCDS DB by GeneID:15163See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023531.14 ENSMUSP00000023531.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023531.14Link to Ensembl Protein Viewer:ENSMUSP00000023531.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000023531Re-query CCDS DB by Protein ID:ENSMUSP00000023531
Original member Current member NCBI NM_008225.2 NP_032251.2 Accepted alive Link to Nucleotide Sequence:NM_008225.2Link to Protein Sequence:NP_032251.2Re-query CCDS DB by Nucleotide ID:NM_008225Re-query CCDS DB by Protein ID:NP_032251Link to BLAST:NP_032251.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032251.2 486 P49710 486 100% 0 0

Chromosomal Locations for CCDS 37336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36937287 36937370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36937833 36937906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36946594 36946723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36948554 36948664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36951133 36951187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36955260 36955370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36955964 36956019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36956571 36956640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36957212 36957423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36961434 36961550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36961991 36962234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36962368 36962430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36962616 36962749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGTGGAAGTCTGTAGTGGGGCATGATGTATCGGTTTCCGTGGAGACCCAGGGTGATGACTGGGATACAG
ACCCTGACTTTGTGAATGACATCTCCGAGAAGGAGCAACGGTGGGGAGCCAAGACCATTGAGGGCTCTGG
ACGCACAGAGCACATCAACATCCACCAGCTGAGGAACAAAGTGTCAGAGGAGCACGACATCCTCAAGAAG
AAGGAGCTGGAATCGGGGCCTAAGGCATCCCATGGCTATGGCGGTCGGTTTGGAGTGGAGAGAGACCGGA
TGGACAAGAGTGCCGTGGGCCACGAGTATGTTGCTGATGTGGAGAAACACTCATCTCAGACTGATGCCGC
CAGAGGCTTTGGGGGCAAATATGGAGTTGAGAGGGACCGGGCAGACAAGTCAGCGGTGGGCTTTGACTAC
AAAGGAGAAGTGGAAAAGCATGCATCTCAGAAAGATTACTCTCATGGCTTTGGTGGCCGCTACGGGGTAG
AGAAGGATAAACGGGACAAAGCAGCCCTGGGATACGACTACAAAGGAGAGACGGAGAAGCACGAGTCTCA
GAGAGATTATGCCAAGGGCTTTGGTGGCCAATATGGAATCCAGAAAGACCGAGTGGATAAGAGTGCTGTT
GGCTTCAATGAAATGGAGGCCCCAACCACGGCGTATAAGAAGACAACACCCATAGAAGCTGCTTCCAGTG
GTGCCCGTGGGCTGAAGGCAAAATTTGAGTCCCTGGCTGAGGAGAAGAGGAAGCGAGAGGAAGAAGAGAA
GGCACAGCAGATGGCCAGGCAGCAACAGGAGCGAAAGGCTGTGGTAAAGATGAGCCGAGAAGTCCAGCAG
CCATCCATGCCTGTGGAAGAGCCAGCGGCACCAGCCCAGTTGCCCAAGAAGATCTCCTCAGAGGTCTGGC
CTCCAGCAGAGAGTCACCTACCGCCAGAGTCTCAGCCAGTGAGAAGCAGAAGGGAATACCCTGTGCCCTC
TCTGCCCACGAGGCAGTCTCCATTGCAGAATCACTTGGAGGACAACGAGGAGCCCCCAGCTCTGCCCCCT
AGGACCCCAGAAGGCCTCCAGGTGGTGGAAGAGCCAGTGTACGAAGCAGCACCCGAGCTGGAGCCGGAGC
CAGAGCCTGACTATGAGCCAGAGCCAGAGACAGAGCCTGACTATGAGGATGTTGGGGAGTTAGATCGGCA
GGATGAGGATGCAGAGGGAGACTATGAGGATGTGCTGGAGCCCGAGGACACCCCTTCTCTGTCCTACCAA
GCTGGACCCTCAGCTGGGGCTGGTGGTGCGGGGATCTCTGCTATAGCCCTGTATGATTACCAAGGAGAGG
GAAGCGATGAGCTTTCCTTTGATCCAGATGACATCATCACTGACATTGAGATGGTGGATGAAGGCTGGTG
GCGGGGCCAATGCCGTGGCCACTTTGGACTTTTCCCTGCAAACTATGTCAAGCTCCTCTAA

Translation (486 aa):
MWKSVVGHDVSVSVETQGDDWDTDPDFVNDISEKEQRWGAKTIEGSGRTEHINIHQLRNKVSEEHDILKK
KELESGPKASHGYGGRFGVERDRMDKSAVGHEYVADVEKHSSQTDAARGFGGKYGVERDRADKSAVGFDY
KGEVEKHASQKDYSHGFGGRYGVEKDKRDKAALGYDYKGETEKHESQRDYAKGFGGQYGIQKDRVDKSAV
GFNEMEAPTTAYKKTTPIEAASSGARGLKAKFESLAEEKRKREEEEKAQQMARQQQERKAVVKMSREVQQ
PSMPVEEPAAPAQLPKKISSEVWPPAESHLPPESQPVRSRREYPVPSLPTRQSPLQNHLEDNEEPPALPP
RTPEGLQVVEEPVYEAAPELEPEPEPDYEPEPETEPDYEDVGELDRQDEDAEGDYEDVLEPEDTPSLSYQ
AGPSAGAGGAGISAIALYDYQGEGSDELSFDPDDIITDIEMVDEGWWRGQCRGHFGLFPANYVKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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