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Report for CCDS53598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53598.1 Public Homo sapiens 11 OR52B2 24 110 108 CCDS HistoryNCBI Gene:255725Re-query CCDS DB by CCDS ID:53598.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53598.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530810.2 ENSP00000432011.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000530810.2Link to Ensembl Protein Viewer:ENSP00000432011.1Re-query CCDS DB by Nucleotide ID:ENST00000530810Re-query CCDS DB by Protein ID:ENSP00000432011
Original member Current member NCBI NM_001004052.1 NP_001004052.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004052.1Link to Protein Sequence:NP_001004052.1Re-query CCDS DB by Nucleotide ID:NM_001004052Re-query CCDS DB by Protein ID:NP_001004052Link to BLAST:NP_001004052.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004052.1 323 Q96RD2 323 100% 0 0

Chromosomal Locations for CCDS 53598.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6169355 6170326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGAGTCACACCAATGTTACCATCTTCCATCCTGCAGTTTTTGTCCTTCCTGGCATCCCTGGGTTGGAGG
CTTATCACATTTGGCTGTCAATACCTCTTTGCCTCATTTACATCACTGCAGTCCTGGGAAACAGCATCCT
GATAGTGGTTATTGTCATGGAACGTAACCTTCATGTGCCCATGTATTTCTTCCTCTCAATGCTGGCCGTC
ATGGACATCCTGCTGTCTACCACCACTGTGCCCAAGGCCCTAGCCATCTTTTGGCTTCAAGCACATAACA
TTGCTTTTGATGCCTGTGTCACCCAAGGCTTCTTTGTCCATATGATGTTTGTGGGGGAGTCAGCTATCCT
GTTAGCCATGGCCTTTGATCGCTTTGTGGCCATTTGTGCCCCACTGAGATATACAACAGTGCTAACATGG
CCTGTTGTGGGGAGGATTGCTCTGGCCGTCATCACCCGAAGCTTCTGCATCATCTTCCCAGTCATATTCT
TGCTGAAGCGGCTGCCCTTCTGCCTAACCAACATTGTTCCTCACTCCTACTGTGAGCATATTGGAGTGGC
TCGTTTAGCCTGTGCTGACATCACTGTTAACATTTGGTATGGCTTCTCAGTGCCCATTGTCATGGTCATC
TTGGATGTTATCCTCATCGCTGTGTCTTACTCACTGATCCTCCGAGCAGTGTTTCGTTTGCCCTCCCAGG
ATGCTCGGCACAAGGCCCTCAGCACTTGTGGCTCCCACCTCTGTGTCATCCTTATGTTTTATGTTCCATC
CTTCTTTACCTTATTGACCCATCATTTTGGGCGTAATATTCCTCAACATGTCCATATCTTGCTGGCCAAT
CTTTATGTGGCAGTGCCACCAATGCTGAACCCCATTGTCTATGGTGTGAAGACTAAGCAGATACGTGAGG
GTGTAGCCCACCGGTTCTTTGACATCAAGACTTGGTGCTGTACCTCCCCTCTGGGCTCATGA

Translation (323 aa):
MSHTNVTIFHPAVFVLPGIPGLEAYHIWLSIPLCLIYITAVLGNSILIVVIVMERNLHVPMYFFLSMLAV
MDILLSTTTVPKALAIFWLQAHNIAFDACVTQGFFVHMMFVGESAILLAMAFDRFVAICAPLRYTTVLTW
PVVGRIALAVITRSFCIIFPVIFLLKRLPFCLTNIVPHSYCEHIGVARLACADITVNIWYGFSVPIVMVI
LDVILIAVSYSLILRAVFRLPSQDARHKALSTCGSHLCVILMFYVPSFFTLLTHHFGRNIPQHVHILLAN
LYVAVPPMLNPIVYGVKTKQIREGVAHRFFDIKTWCCTSPLGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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