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Report for CCDS49046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49046.1 Public Mus musculus 12 Cog5 23 108 98 CCDS HistoryNCBI Gene:238123Re-query CCDS DB by CCDS ID:49046.1Re-query CCDS DB by GeneID:238123See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036862.4 ENSMUSP00000044797.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036862.4Link to Ensembl Protein Viewer:ENSMUSP00000044797.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000036862Re-query CCDS DB by Protein ID:ENSMUSP00000044797
Original member Current member NCBI NM_001163126.1 NP_001156598.1 Accepted alive Link to Nucleotide Sequence:NM_001163126.1Link to Protein Sequence:NP_001156598.1Re-query CCDS DB by Nucleotide ID:NM_001163126Re-query CCDS DB by Protein ID:NP_001156598Link to BLAST:NP_001156598.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156598.1 829 Q8C0L8 829 100% 0 0

Chromosomal Locations for CCDS 49046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31654890 31654983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31660717 31660856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31665465 31665522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31669770 31669824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31670316 31670385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31685653 31685773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31760847 31760977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31790847 31791012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31801983 31802095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31802406 31802483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31820125 31820206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31833182 31833386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31837195 31837356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31839755 31839854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31869419 31869529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31870072 31870134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31886205 31886308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31893971 31894208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31900897 31900973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31919651 31919777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31920554 31920633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31925645 31925759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2490 nt):
ATGGAAGGTGGAGACAGCACAATTTCCGTAGCAGGCCGTGGGGCTTCGGGTTCCGCAGTAGTGGCGGCGA
CCGTGCAGGCGATCCTGCAGGACGACTGTTATAGTGAATTTTTAAATGAAGACTTTGATGTAAAAACTTA
CACTTCCCAATCTATTCATCAAGCTGTAATTGCTGAGCAACTAGCAAAACTTGCCCAAGGGATCAGTCAG
CTGGATAAAGAACTACACCTACAGGTTGTTGCAAGACATGAAGATTTATTGGCACAAGCAACTGGGATTG
AGTCTTTGGAAGGTGTTCTTCAGATGATGCAGACGAGAATTGGAGCTCTACAGGGAGCTGTTGATAGGAT
GAAATCAAAGATTGTTGAACCATACAATAAAATAGTAGCCCGTACTGCACAACTGGCAAGACTTCAGGTT
GCCTGTGATTTGCTTCGGAGAATAATTCGCATCTTATATCTCAGTAAGAGGCTCCAGGGACAACTGCAAG
GAGGGAGTAGAGAGATAACAAAAGCTGCTCAGAGTCTCAATGAACTTGATTATCTTTCTCAAGGAATAGA
TCTTTCTGGAATAGAAGTAATAGAGAATGATCTACTCTTTATTGCAAGAGCTCGACTTGAAGTGGAAAAC
CAAGCTAAGCGTCTGCTGGAGCAAGGTGTGGAGACCCAGAATCCAACTCAGGTTGGAACAGCTCTTCAGG
TTTTCCATAACCTCGGGACTTTGAAGGAGACTGTTACCAGTGTCGTGGATGGCTATTGTGCTGCTTTGGA
AGACAGCATCAACAATGCATTGGACGTCAAAGTTTTGACTCAGCCTTCCCAGTCAGCTGTGCGAGGAGGC
CCTGGGCGAGCCGCCATGCCAACTCCAGGAAGCACAGCAGGTTTTCGGGCTTCCCTCTGGACCAATATGG
AAAAACTTATGGATCACATCTGTGCTGCTTGTGGACAGGTACAACATCTACAAAAAGTATTAACCAAGAA
GAGAGATCCTGTTTCTCACATTTGTTTCATTGAAGAAATAATTAAGGATGGACAGCCTGAAATTTTATAC
ATGTTTTGGAATGCAGTCACCCTGGCACTTTCTTCTCACTTTCATTCAGCAACAAACTCTTCTATGTTTT
TGAAGCAAGCATTTGAAGGTGAATACCCTAAACTCTTACGTCTTTATAATGACTTATGGAAGCGTCTTCA
GCAGTCCAGCCAGAATACCCAGGGGACTTTCAGTCCAAGTGGGACTCCTGACCTCTGTGTGGACCTCCCA
CACATGGAAGACGACACACAAGACATGTTCAGACTGAAAAGGCCAGATTATGATCCAGAAAAGGCTTTGA
AAGATTCACTGCAACCATATGAGGCTGCTTATCTCTCAAAATCCCTATCACGCCTCTTCGATCCCATCAA
CTTGGTTTTTCCTCCGGGAGGACGTAATCCTCCTTCCTCTGATGAGCTCGATGGAATCACTAAGACTATA
ACAAGTGAACTCAATGTAGCTGCTGTTGATGCAAACCTCACATTAGCTGTGTCAAAAAATGTGGCAAAGA
CCATCCAGTTATATGCTGTGAAATCAGAACAGCTTCTCTCTACTCAAGGAGATGCAAGCCAGGTGATTGG
ACCTCTCACGGAAGGACAGAAGAGAAATGTGGGTGTGGTGAACTCCCTGTTTAAGCTGCACCAGTCAGTA
ACAAAGGTTGTTGCCAGTCAGAGCTCATTCTCAGCAACAGCCGAGCAAACCATAATGTCAGCCCTAAAGA
CAATTCACGATCTTATGGGGAATGCCATACAGCCCTTGCTGACGTCAGTGGCAGATGCGATCGAGGCCAT
AATCATCACCATGCATCAGGAAGATTTTTCTGGGGCATCAAGCAGCTCAGGAAAACCTGATGTTCCTTGT
TCCCTGTACATGAAAGAGCTACAAGGTTTCATTGCCAGAGTTATGAATGACTACTTTAAACACTTTGAAT
GCTTGGATTTTGTTTTTGACAACACTGAAGCTATTGCCCAAAGAGCCATTGAACTTTTTATCCGCAATGC
CAGTCTCATAAGACCTCTTGGTGAAGGTGGGAAACTGCGACTTGCTGCTGATTTTGCACAGATGGAGTTG
GCTGTGGGCCCCCTTTGCAGGCGAGTGTCGGATCTGGGAAAGTCCTATCGGATGCTGAGGTCATTTAGGC
CCCTGCTCTTCCAGACAAGTGAACATGTGGCCGACAGCCCCGCAGTGGGAGACATTATACCATTCAGCAT
CATCATTCAGTTTCTGTTCACAAGAGCACCAGCTGAGCTGAAATCCCCCTTCCAGAGGGCAGAATGGTCT
CATGCTCGCTTCTCCCAGTGGCTGGATGATCACCCATCTGAAAAGGACAGGCTGCTCCTCCTCAGGGGAG
CCCTGGAAGCTTATGTTCAGTCAGTGAGAAGCAGGGACGGTAAAGAATTTGCACCAGTTTATCCCATTAT
GGTTCAGCTGCTTCAAAAGGCTATGTCTGCTCTTCAGTGA

Translation (829 aa):
MEGGDSTISVAGRGASGSAVVAATVQAILQDDCYSEFLNEDFDVKTYTSQSIHQAVIAEQLAKLAQGISQ
LDKELHLQVVARHEDLLAQATGIESLEGVLQMMQTRIGALQGAVDRMKSKIVEPYNKIVARTAQLARLQV
ACDLLRRIIRILYLSKRLQGQLQGGSREITKAAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVEN
QAKRLLEQGVETQNPTQVGTALQVFHNLGTLKETVTSVVDGYCAALEDSINNALDVKVLTQPSQSAVRGG
PGRAAMPTPGSTAGFRASLWTNMEKLMDHICAACGQVQHLQKVLTKKRDPVSHICFIEEIIKDGQPEILY
MFWNAVTLALSSHFHSATNSSMFLKQAFEGEYPKLLRLYNDLWKRLQQSSQNTQGTFSPSGTPDLCVDLP
HMEDDTQDMFRLKRPDYDPEKALKDSLQPYEAAYLSKSLSRLFDPINLVFPPGGRNPPSSDELDGITKTI
TSELNVAAVDANLTLAVSKNVAKTIQLYAVKSEQLLSTQGDASQVIGPLTEGQKRNVGVVNSLFKLHQSV
TKVVASQSSFSATAEQTIMSALKTIHDLMGNAIQPLLTSVADAIEAIIITMHQEDFSGASSSSGKPDVPC
SLYMKELQGFIARVMNDYFKHFECLDFVFDNTEAIAQRAIELFIRNASLIRPLGEGGKLRLAADFAQMEL
AVGPLCRRVSDLGKSYRMLRSFRPLLFQTSEHVADSPAVGDIIPFSIIIQFLFTRAPAELKSPFQRAEWS
HARFSQWLDDHPSEKDRLLLLRGALEAYVQSVRSRDGKEFAPVYPIMVQLLQKAMSALQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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