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Report for CCDS53249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53249.1 Public Mus musculus X Tceanc 23 108 98 CCDS HistoryNCBI Gene:245695Re-query CCDS DB by CCDS ID:53249.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112188.7 ENSMUSP00000107806.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112188.7Link to Ensembl Protein Viewer:ENSMUSP00000107806.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112188Re-query CCDS DB by Protein ID:ENSMUSP00000107806
Original member Current member EBI ENSMUST00000180322.1 ENSMUSP00000136691.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180322.1Link to Ensembl Protein Viewer:ENSMUSP00000136691.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180322Re-query CCDS DB by Protein ID:ENSMUSP00000136691
Original member Current member NCBI NM_001007577.2 NP_001007578.2 Accepted alive Link to Nucleotide Sequence:NM_001007577.2Link to Protein Sequence:NP_001007578.2Re-query CCDS DB by Nucleotide ID:NM_001007577Re-query CCDS DB by Protein ID:NP_001007578Link to BLAST:NP_001007578.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007578.2 359 Q3US16 359 100% 0 0

Chromosomal Locations for CCDS 53249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166502318 166503397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGTCTGACAAGAACCAAATCATTGCCAGGGCTTCCTTGATTGAGCAACTGGTGTCTAAAAGGTATTTTG
AGGATATTGGTAAACAGCTTACTGAGCTAGAAATGATTTATGTGTCTAAGGAGCATCTGCAGGAGACAGA
TGTAGTCAGAGCTGTTTACAGAGTCCTCAAAAACTGCCCATCAGTGACTTTAAAGAAGAAGGCCAAGTGT
CTGCTGGCCAAGTGGAGAGGTTTCTATAAGAGTACACACTGCAAACCAAGGCAAAGCCCTAAAGTACTCC
ACACAAATGCTAATAAAGAAGAAAGTGCAGCAGTTTCTCAGGATGTAAGCCAGGATGAAACCTCAGGCTC
TAGCCATAGTGAGATCATGGGTCTCTGCAGTTCTCTCTCTAGGCTGTTACCCCAAGATGCTGCAAAGCCT
GCTGCAGCAATTGGATCTGAAAGTAGCACTGCTCAAATGGAAATTAATGAAGGATATTTGAAGGGTGATG
ACTCTGAATGCACTCGCAAGAGCTCAGGTGTGTTTCAAGGTACTTTAGTGTCTGTGAGATCTAAGTGCGT
AGAACTTCTTTACACAGCATTAGCTAGTTCTTGCACAGATCACACAGAAGTGCACATATGGCAGAACTTA
GCAAGAGAAATTGAAGAGCACATTTTTACCCTTCATTCAAACAATATCAAAAAATATAAAACTAGTATTC
GAAGCAAAGTTGCCAATTTGAAAAACCCCAGAAATTTTCATTTACAACAAAACTTCCTCTCTGGAACCAT
GTCTGCAAGGGAGTTTGCTGAAATGAGTGTCTTGGACATGGCAAGCCAGGAACTCAAGCAACTGAGAGCT
TCCTACACAGAATCCAGCATTCAAGAACATTGCCTTCCCCAATCAGTTGATGGCACATGGACAAATAAAA
TTAAGTGTAGGCGCTGTGATAAATACAACTGCAAGGTCACTGTGATTGCCAGAGGAACACTTTTCCTTCC
AAGTTGGGTGCAGAATTCAAACCCAGATGAACAAATGACCTATGTCATTTGTAATGAATGTGGGGAGCAG
TGGTACCATAACAACTGGGTATGCTTGTGA

Translation (359 aa):
MSDKNQIIARASLIEQLVSKRYFEDIGKQLTELEMIYVSKEHLQETDVVRAVYRVLKNCPSVTLKKKAKC
LLAKWRGFYKSTHCKPRQSPKVLHTNANKEESAAVSQDVSQDETSGSSHSEIMGLCSSLSRLLPQDAAKP
AAAIGSESSTAQMEINEGYLKGDDSECTRKSSGVFQGTLVSVRSKCVELLYTALASSCTDHTEVHIWQNL
AREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMSAREFAEMSVLDMASQELKQLRA
SYTESSIQEHCLPQSVDGTWTNKIKCRRCDKYNCKVTVIARGTLFLPSWVQNSNPDEQMTYVICNECGEQ
WYHNNWVCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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