NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20853.1 Public Mus musculus 7 Fkrp 23 108 98 CCDS HistoryNCBI Gene:243853Re-query CCDS DB by CCDS ID:20853.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061390.8 ENSMUSP00000059091.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061390.8Link to Ensembl Protein Viewer:ENSMUSP00000059091.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061390Re-query CCDS DB by Protein ID:ENSMUSP00000059091
Original member Current member NCBI NM_001358846.1 NP_001345775.1 Accepted alive Link to Nucleotide Sequence:NM_001358846.1Link to Protein Sequence:NP_001345775.1Re-query CCDS DB by Nucleotide ID:NM_001358846Re-query CCDS DB by Protein ID:NP_001345775Link to BLAST:NP_001345775.1
Original member Current member NCBI NM_173430.2 NP_775606.1 Accepted alive Link to Nucleotide Sequence:NM_173430.2Link to Protein Sequence:NP_775606.1Re-query CCDS DB by Nucleotide ID:NM_173430Re-query CCDS DB by Protein ID:NP_775606Link to BLAST:NP_775606.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345775.1 494 Q8CG64 494 100% 0 0
NP_775606.1 494 Q8CG64 494 100% 0 0

Chromosomal Locations for CCDS 20853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16810451 16811935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGCGGCTCACCCGCTGCTGGGCTGCCCTGGCAGCCGCCATCATCCTCAACCTCCTAGTCTTCTTCTATG
TGTCATGGCTACAACACCAGCCCAGAAACTCCCGGGCCCGGGGTCCCCGCCGGACTTCTGCCATTGGCCC
CCGAGTCACCGTCCTGATTCGGGAATTTGAGGCTTTTGACAACGCGGTGCCAGAGCTAGTGGATTCCTTT
TTGCAGCAGGACCCAGCCCAGCCCGTGGTAGTGGCGGCCGACACACTCCCTTACCCACCCCTGGCCTTGC
CTCGCATCCCCAACGTTCGCCTGGCTCTGCTCCAGCCAGCCCTGGACCGGCCAGCGGCGGCCTCGCGCCC
GGAGACCTACGTAGCCACCGAGTTTGTGGCTCTAGTGCCTGATGGAGCGCGGGCCGAGTCACCAGGCCAC
CTGGAGCGAATGGTGGAGGCGCTCCGAGGGAGCAGCGCGCGCCTAGTGGCCGCCCCGGTCGCCACCGCCA
ACCCAGCGCGGTGCCTAGCTCTGAACGTCAGCCTGCGGGAGTGGACTGCGCGCTACGACCCAGCTCCCAG
CGCGCCCCGCTGCGACGCTTTGGATGGCGACGCTGTGCTGCTGATGCGCTCCCGCGACCTCTTCAACCTC
TCGGTGCCCCTGGCGCGGCCGCTGGCCACCAGCCTCTTCCTACAGACCGCCCTGCGCGGCTGGGCAGTGC
AGCTGCTGGACTTGACCTTCGCCGCGGCGCGCCAGCCACCGCTGGCCACCGCCCACGCGCGCTGGAAGGC
GGAACGTGAGGGGCGCTCACGGAGAGCGGCGCTGCTGCGCTCGTTGGGAATCCGTCTGGTGAGCTGGGAA
GGCGGGCGGCTAGAGTGGTTTGGCTGCAGCAAGGAGAGCGCGCGCTGCTTCGGTACGGTGGCGGGCGACA
CACCCGCCTACCTGTATGAGGGCCGCTGGACCCCACCTTGTTGCCTGCGCGCGCTGCGCGAGACTGCGCG
CTACGTGGTGGGCGTGCTGGAGGCGGCGGGCGTGCGCTACTGGTTGGAGGGCGGCTCGCTGCTGGGTGCA
GCTCGCCACGGCGACATCATCCCTTGGGACTACGACGTAGATCTGGGCATCTACCTGGAGGACGTGGGCA
ACTGCGAGCAGTTGCGGGGTGCCGAAGCTGGCTCGGTAGTGGATGAACGCGGCTTTGTGTGGGAGAAGGC
GGTGGAGGGCGACTTCTTCCGAGTACAGTACAGTGAGAACAACCACCTGCACGTGGACCTGTGGCCCTTT
TACCCCCGCAATGGGGTTATGACCAAGGACACGTGGCTGGACCACCGGCAGGATGTTGAGTTCCCAGAGC
ACTTCCTGCAGCCACTTGTCCCCCTGCCCTTTGCGGGTTTCATGGCACAGGCCCCTAACAACTACCGCCG
CTTCCTGGAGCTGAAGTTTGGGCCTGGGGTCATCGAGAACCCGGAGTACCCCAACCCCGCACTCTTAAGC
TTGACAGGCGGTTGA

Translation (494 aa):
MRLTRCWAALAAAIILNLLVFFYVSWLQHQPRNSRARGPRRTSAIGPRVTVLIREFEAFDNAVPELVDSF
LQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETYVATEFVALVPDGARAESPGH
LERMVEALRGSSARLVAAPVATANPARCLALNVSLREWTARYDPAPSAPRCDALDGDAVLLMRSRDLFNL
SVPLARPLATSLFLQTALRGWAVQLLDLTFAAARQPPLATAHARWKAEREGRSRRAALLRSLGIRLVSWE
GGRLEWFGCSKESARCFGTVAGDTPAYLYEGRWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGA
ARHGDIIPWDYDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSENNHLHVDLWPF
YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFMAQAPNNYRRFLELKFGPGVIENPEYPNPALLS
LTGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH