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Report for CCDS19511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19511.1 Public Mus musculus 5 Slc49a3 23 108 98 CCDS HistoryNCBI Gene:243197Re-query CCDS DB by CCDS ID:19511.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031455.4 ENSMUSP00000031455.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031455.4Link to Ensembl Protein Viewer:ENSMUSP00000031455.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031455Re-query CCDS DB by Protein ID:ENSMUSP00000031455
Original member Current member NCBI NM_172883.3 NP_766471.1 Accepted alive Link to Nucleotide Sequence:NM_172883.3Link to Protein Sequence:NP_766471.1Re-query CCDS DB by Nucleotide ID:NM_172883Re-query CCDS DB by Protein ID:NP_766471Link to BLAST:NP_766471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766471.1 516 Q8CE47 516 100% 0 0

Chromosomal Locations for CCDS 19511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108441984 108442261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108443024 108443133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108443439 108443596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108443855 108444007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108444471 108444587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108444672 108444809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108445206 108445282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108445451 108445664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108445936 108446094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108448718 108448864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGCCGGGACTATGGATAGGCTGGAAGACTGCAACAGCCCGGAAACATCTGGGACCGCCGGAGACGCGT
TGCCTAGTCCCCGAGTGTATGCGCGTCGCTGGGTCTTTCTGCTGGTGGTCAGCCTCCTGAGCTGCTCCAA
TGCGATGCTTTGGCTCAGCTTTGCACCTGTAGCAGACACCATAGCACAGCACTTCTTCCTGTCCATGGAT
CAGGTCAACTGGCTGTCACTAATATACTTTGTGTTATCCATCCCATTTGGCATGGCTGCCATCTGGGTTC
TGGACTCTGTTGGCCTCCGTGGAGCGACTATCCTGGGTGCATGGTTGAATTTTTCTGGGAGTGTGCTACG
TGCTGTGCCGTGCTTGCCTGTCAGGATTCCAAGCCCCTTTGCCTTCTTCATGAGTGGCCAGAGCCTCTGT
GCCCTGGCCCAGACCCTGGTCGTCTCTTCTCCAGCCAAGCTGGCTGCCTTGTGGTTTCCAGAGCATCAGC
GAGCCACAGCTAACATGATCAGCACCATGTCAAATCCTCTGGGCCTCCTTATTGCAAATGTGCTGTCTCC
TGCCCTAGTCAAGAAAGCAGATGACATCCCTATGATGCTTGGCATCTACATCGGTCCTGCTGCCCTTGCC
TGTCTGTTGGCCACTGTCTGCCTCTGGGAGAGTGTGCCTCCTACCCCACCATCCACAGGGGCTGCCAACT
CTACTTCAGAGAGTTTCCTCCGAGGGCTCAAACTGCTCATACAGAATAAGGCCTACGTCCTCCTGGCCGT
ATGCTTCGGTGGTGGCATTGGTGTCTTCTCTAGCTTCTCAGCCCTCCTGGAACAGATCCTTTGTGCCAGT
GGCTATTCTAATGAGTTCTCAGGCCTCTGTGGGGCTCTCTTCATCGTGTTTGGAATTTTGGGGGCACTGC
TTCTAGGCCTGTATGTGGATCGGACCAAGCACTTCACCGAAGCCACCAAGATAGGCCTCTGTCTGACTTC
CATGACCTCTGTGGCCTTTGCTCTGGTATCCCAGCTGCAGGGACAGACCCTTGCACTGGCTGCCATCTGC
TCCCTCTTTGGGCTCTTTGGCTTCTCAGTGGCACCTGTGGTCATGGAGCTGGCTGTTGAATGCTCATTTC
CTGTGGGTGAGGGTGCCTCTGCTGGCTTGATCTTTGTCCTGGGGCAGGCCGAGGGTATGCTCATCATGCT
GCTATTGACGGCACTGACTGTGCGGCGAACGGGTCCATCCTTTTCTACCTGCCAGCAGGGTGAGGACCCT
CTGGACTGGACAGTGTCCCTGCTGCTGCTGGCCGGCCTATGTACCCTTTTCACCTGTGTCTTGGTGATCT
TCTTCAACACCCCATACCGGCGCCTGGAGGCTGAGTCTGGCGGATCCTCTTCACCCACGATGTGTGCCAG
GGATCCAAGGACTGTTAGTCCCACCCAAGTGCCACCACTTGAGACTCCTGGCTTGACTCCTCCAGATGAG
GCCTTGAAGGAAGCTCCTGGCCCTGCTTCTGTCTCCAAAGGACATTCAGAATGGGCAGAGACTATGCCCA
GAGACGTCTAG

Translation (516 aa):
MAGTMDRLEDCNSPETSGTAGDALPSPRVYARRWVFLLVVSLLSCSNAMLWLSFAPVADTIAQHFFLSMD
QVNWLSLIYFVLSIPFGMAAIWVLDSVGLRGATILGAWLNFSGSVLRAVPCLPVRIPSPFAFFMSGQSLC
ALAQTLVVSSPAKLAALWFPEHQRATANMISTMSNPLGLLIANVLSPALVKKADDIPMMLGIYIGPAALA
CLLATVCLWESVPPTPPSTGAANSTSESFLRGLKLLIQNKAYVLLAVCFGGGIGVFSSFSALLEQILCAS
GYSNEFSGLCGALFIVFGILGALLLGLYVDRTKHFTEATKIGLCLTSMTSVAFALVSQLQGQTLALAAIC
SLFGLFGFSVAPVVMELAVECSFPVGEGASAGLIFVLGQAEGMLIMLLLTALTVRRTGPSFSTCQQGEDP
LDWTVSLLLLAGLCTLFTCVLVIFFNTPYRRLEAESGGSSSPTMCARDPRTVSPTQVPPLETPGLTPPDE
ALKEAPGPASVSKGHSEWAETMPRDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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