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Report for CCDS49216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49216.1 Public Mus musculus 13 Pom121l2 23 108 98 CCDS HistoryNCBI Gene:195236Re-query CCDS DB by CCDS ID:49216.1Re-query CCDS DB by GeneID:195236See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117882.1 ENSMUSP00000113688.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117882.1Link to Ensembl Protein Viewer:ENSMUSP00000113688.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117882Re-query CCDS DB by Protein ID:ENSMUSP00000113688
Original member Current member NCBI NM_001162929.1 NP_001156401.1 Accepted alive Link to Nucleotide Sequence:NM_001162929.1Link to Protein Sequence:NP_001156401.1Re-query CCDS DB by Nucleotide ID:NM_001162929Re-query CCDS DB by Protein ID:NP_001156401Link to BLAST:NP_001156401.1

Chromosomal Locations for CCDS 49216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21981561 21982888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21988487 21988568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGGCAGCTACCTGGGCAAAGCGGGGTCCTCGCCGCGGTCCCCAGCACAGGGGCGCGCAGACTCAGGGG
AGAAGCCTGCGAGCCGCCGACCCGCTAGGCCCCTCTACCAGGTCCACCGGGTGCAGCATGTCCACCGCGC
CCAGCCCGCTCGGAGACACAGGCCGGCCCGGAGGCCGCCCAACTGGGATCCCGCCAACCCTACCGCTTTC
GTCAGTGAGGCCTGGAGGCGCTTCCCCATGAAGAGGCCACAGAACCCCATCATGGGCTCTCTTCCTTCAG
ACTGGTGGGAAAGTTACCTGAAGCGTAATATTTGGTCCCTTCGTCACCCTCGGGCCACATGGAGTCCGGT
GACAGTCAAGATCTCGCCTCCTGAGCGGAGACCACGGCCCTTGTTCCCGGTCTCAAGAGTGGTGAACTCC
GCGGGACCTTCAGAGGAGCCACCAGGGCCCTGTGGAAAGGACCCGGTGCTGAGGGCCCTCCTCCAGTGCA
GGAAGGGCAGAGCCAGGTGGGAAGAGCCACTGTTCCCGGACACCTCCGACAGCCAAAGGCATTCGGCCTC
CGTATGGTCCGCCTTTAAGCCCCTGTTGAAAAGTGGGGCCACTGTTTCGTTTGTGGCCAGGCCTGGGTCT
CTGAAAAGGAGACCCCATGTCCAGAGCTCAGATGATAAATGTAAGAGATCCGGTTGCTTCTCTGGGGCCC
TTGTGGCCAGCATACATACCCAAGGCCCCCCCAGCACAAAAAGAAATGCTATTACCAGTTCTTACAGTTC
TTCTAGAGAGCTCTCAGGATCTTGGAAGAGACATTTTCTCAGGACATTAGTCCAGACTCCAGAATGGCCA
TTGAAAAAAGCAGGAGAGAGTCCTAATTCTCACCTCTCAGTCACACCCAGCAGCTCTGGACAGCTAAATG
GAGAGATTCCTCTACTGCAGTCTGGCCCTAGGGACCTGCTAACTATACCTTGCCAGCAAGGTCCTGTTGT
CACTGAAGAGGACCCAACATTAGAGGGGCAAGCTGTGCCGAGCAACCAAACCACAGAAGCTACAACCGGG
ACAGCCGGAGACTCCATTCCAGAGATGAGGGCTGGAATTCAGCCTACCTTGTCTCTCAGTCGGTCGTCTT
CTGAGAGAGTTCTTAGCACCCACGTGAACCCTCAGCTGGAAAGCTTGAAGAATATGCCTGCCCCACTCGG
GTGCTCACAGTTAGAGCACATCCAAGGCATCTCTTCAGACTCAAATCCCTCAATTGCTTCCACCCAGGCG
TCTCCAAGCTCTCCCACAACACCAGTCACTGATTCCACCTGGCTATCTTCAATCCCTCGGGCTCACAGGG
AAAAGTGTCTGTCTGGAAGATGGAGCTGGACCTCAGAGGCCAAGAAAGATGTCTTGAGTGGGGACAAGTC
TCTTCCGTGA

Translation (469 aa):
MGSYLGKAGSSPRSPAQGRADSGEKPASRRPARPLYQVHRVQHVHRAQPARRHRPARRPPNWDPANPTAF
VSEAWRRFPMKRPQNPIMGSLPSDWWESYLKRNIWSLRHPRATWSPVTVKISPPERRPRPLFPVSRVVNS
AGPSEEPPGPCGKDPVLRALLQCRKGRARWEEPLFPDTSDSQRHSASVWSAFKPLLKSGATVSFVARPGS
LKRRPHVQSSDDKCKRSGCFSGALVASIHTQGPPSTKRNAITSSYSSSRELSGSWKRHFLRTLVQTPEWP
LKKAGESPNSHLSVTPSSSGQLNGEIPLLQSGPRDLLTIPCQQGPVVTEEDPTLEGQAVPSNQTTEATTG
TAGDSIPEMRAGIQPTLSLSRSSSERVLSTHVNPQLESLKNMPAPLGCSQLEHIQGISSDSNPSIASTQA
SPSSPTTPVTDSTWLSSIPRAHREKCLSGRWSWTSEAKKDVLSGDKSLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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