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Report for CCDS19037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19037.1 Public Mus musculus 4 Atad3a 23 108 98 CCDS HistoryNCBI Gene:108888Re-query CCDS DB by CCDS ID:19037.1Re-query CCDS DB by GeneID:108888See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030903.11 ENSMUSP00000030903.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030903.11Link to Ensembl Protein Viewer:ENSMUSP00000030903.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030903Re-query CCDS DB by Protein ID:ENSMUSP00000030903
Original member Current member NCBI NM_179203.3 NP_849534.2 Accepted alive Link to Nucleotide Sequence:NM_179203.3Link to Protein Sequence:NP_849534.2Re-query CCDS DB by Nucleotide ID:NM_179203Re-query CCDS DB by Protein ID:NP_849534Link to BLAST:NP_849534.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849534.2 591 Q925I1-1 591 100% 0 0

Chromosomal Locations for CCDS 19037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155741188 155741352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155746029 155746137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155747314 155747481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155748671 155748741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155749157 155749208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155750132 155750256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155750473 155750598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155750868 155750924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155751437 155751592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155753567 155753636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155753882 155754047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155754757 155754826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155755679 155755738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155756061 155756162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155757092 155757168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155760802 155761003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGTCGTGGCTCTTCGGCATCAAGGGCCCCAAGGGCGAAGGCACAGGGCCTCCGCTGCCCTTGCCGCCCG
CTCAACCCGGGGCGGAGGGCGGCGGTGACCGCGGGGCGGGAGACCGGCCATCGCCCAAGGACAAATGGAG
CAACTTCGACCCGACGGGCCTGGAACGTGCGGCCAAAGCGGCTCGCGAGTTGGAGCACTCGCGCCATGCC
AAGGAGGCACTGAGTCTCGCACAGATGCAGGAGCAGACGCTGCAGCTGGAACAGCAGTCCAAGCTCAAGG
AGTACGAAGCTGCCGTAGAGCAGCTGAAGAGCGAACAGATCCGTGTGCAAGCCGAGGAAAGAAGGAAAAC
CCTGACTGAAGAGACACGACAGCACCAGGCTAGGGCCCAGTACCAGGATAAGCTCGCTCGACAGCGCTAT
GAGGACCAGCTGAAACAACAGCAACTTCTGAATGAAGAGAATTTAAGGAAACAAGAGGAGTCTGTGCAGA
AGCAGGAGGCCATACGGCGAGCCACTGTGGAGCGCGAGATGGAGCTGAGGCATAAAAACGAGATGTTGCG
GGTGGAAGCTGAAGCCCGAGCACGGGCCAAGGCTGATCGAGAGAATGCAGATATCATCCGGGAACAGATT
CGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAGGACAGCTGGCACCTTGCTTGGTG
AAGGATTCCGTGCATTTGTGACAGACTGGGACAAAGTGACAGCTACGGTGGCTGGGTTGACACTATTAGC
TGTTGGAGTCTATTCTGCAAAGAATGCTACTTCTGTTGCTGGTCGGTATATTGAGGCCCGATTGGGAAAG
CCGTCCTTGGTGAGAGAGACCTCCCGAATCTCAGTGCTAGAGGCATTGAGGCATCCCATCCAGGTCAGCA
GGCGACTGGTCAGCAGACCCCAGGATGCATTGGAGGGCGTCATCCTCAGTCCTAGCCTGGAGGCACGGGT
CCGAGATATTGCCATCGCAACAAGAAATACCAAGAAGAACAAAAGCCTGTATAGGAACGTTCTGATGTAT
GGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACTTGCACTGCATTCAGGCATGGACTACGCCA
TCATGACAGGCGGGGACGTGGCCCCAATGGGGCGGGAGGGTGTGACTGCCATGCACAAGGTCTTCGACTG
GGCAAGCACCAGCCGACGAGGCCTCCTGCTCTTTGTGGATGAAGCAGACGCCTTCCTCAGGAAACGAGCG
ACTGAAAAGATAAGTGAAGACCTCAGGGCTACTCTGAATGCCTTCCTACACAGGACAGGACAGCACAGTA
GTAAGTTCATGCTGGTCCTGGCCAGTAACCAGCCTGAGCAGTTTGATTGGGCTATCAATGACCGCATTGA
CGAGATGGTCTGCTTTGCCCTGCCACAGCGGGAGGAGCGAGAGCGCCTGGTGAGAATGTATTTTGACAAG
TATGTCCTTAAGCCGGCCACAGAAGGAAAGCAGCGCTTGAAGGTGGCCCAGTTTGACTATGGAAAGAAAT
GCTCAGAGGTTGCCCAGCTAACGGAGGGGATGTCAGGCCGGGAGATTGCTCAGCTTGCTGTGGCGTGGCA
GGCCATGGCATATTCATCTGAGGATGGAGTCCTCACGGAAGCTATGATGGATGCCCGTGTGCAGGATGCT
GTGCAGCAGCACCAGCAGAAGATGCAGTGGCTTAAAGTAGAGAGACCCGATTCCCAGACCAACAAGCCGC
CACATCCTTCACTCCTCAGCTGCTGA

Translation (591 aa):
MSWLFGIKGPKGEGTGPPLPLPPAQPGAEGGGDRGAGDRPSPKDKWSNFDPTGLERAAKAARELEHSRHA
KEALSLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRVQAEERRKTLTEETRQHQARAQYQDKLARQRY
EDQLKQQQLLNEENLRKQEESVQKQEAIRRATVEREMELRHKNEMLRVEAEARARAKADRENADIIREQI
RLKAAEHRQTILESIRTAGTLLGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGRYIEARLGK
PSLVRETSRISVLEALRHPIQVSRRLVSRPQDALEGVILSPSLEARVRDIAIATRNTKKNKSLYRNVLMY
GPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRA
TEKISEDLRATLNAFLHRTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMYFDK
YVLKPATEGKQRLKVAQFDYGKKCSEVAQLTEGMSGREIAQLAVAWQAMAYSSEDGVLTEAMMDARVQDA
VQQHQQKMQWLKVERPDSQTNKPPHPSLLSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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