NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71882.1 Public Mus musculus 7 Shisa7 23 108 98 CCDS HistoryNCBI Gene:232813Re-query CCDS DB by CCDS ID:71882.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119433.3 ENSMUSP00000112423.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119433.3Link to Ensembl Protein Viewer:ENSMUSP00000112423.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000119433Re-query CCDS DB by Protein ID:ENSMUSP00000112423
Original member Current member NCBI NM_001290291.1 NP_001277220.1 Accepted alive Link to Nucleotide Sequence:NM_001290291.1Link to Protein Sequence:NP_001277220.1Re-query CCDS DB by Nucleotide ID:NM_001290291Re-query CCDS DB by Protein ID:NP_001277220Link to BLAST:NP_001277220.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277220.1 541 Q8C3Q5-2 541 100% 0 0

Chromosomal Locations for CCDS 71882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4829635 4830275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4830759 4830908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4834230 4834384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4836044 4836723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGCCGGCCCTGCTGCTGCTCGGGACCGTCGCGCTGCTAGCCTCCGCAGCGGGCCCGGCGGGGGCGCGCC
CATCCAACGACACAAGCTCAGTGGCCCCGGGCCCGCTGCCCGCGCTACTCGCGCACCTGCGGCGCTTGAC
CGGGGCTCTGGCGGGCGGCGGGAGCGCGGCAGGTACCAGCGCCAACGCCACCAAGACCAGCCCCGCGAGT
GGCACGGGCGCAGCGGCACGGGCGCCTCCTCCGGCCGAGCTCTGCCATGGCTACTACGATGTCATGGGCC
AGTACGACGCCACCTTCAACTGCAGCACCGGCTCCTACCGCTTCTGTTGTGGCACCTGCCACTACCGTTT
CTGCTGCGAGCACCGCCACATGCGCCTGGCGCAGGCCTCCTGCTCCAACTACGACACGCCACGCTGGGCC
ACCACGCCCCCGCCGCTGGCTGGAGGCGCCGGGGGCGCTGGGGGTGCGGGTGGGGGACCAGGGCCGGGCC
AGGCAGGGTGGCTGGAAGGGGGCCGGGCCGGGGGCGCTGGGGGACGTGGGGGAGAGGGCCCAGGGGGCAG
CACAGCCTACGTGGTGTGCGGAGTCATCAGTTTCGCCCTGGCGGTGGGCGTCGGTGCCAAAGTGGCCTTC
AGCAAGGCGTCACGTGCACCCAGGGCGCACCGGGAGATCAACGTGCCCAGAGCTCTCGTGGATATTCTCA
GGCATCAAGCAGGACCTGCAACCCGCCCGGACCGGGCCAGAAGCAGTTCTCTGACCCCAGGGCTGGGAGG
CCCAGACAGCATGGCCCCAAGGACACCCAAGAACCTTTACAACACCATGAAGCCCTCCAACCTCGACTGG
CGTGCTATGCCGCCGCCCAGCCCCTCCCTGCACTACTCCACACTATCCTGCTCCCGATCCTTCCACAACC
TCTCTCATCTTCCCCCGTCCTATGAGGCTGCTGTGAAATCAGAACTGAATCGATACTCTTCCCTCAAGAG
ACTGGCTGAGAAAGATCTGGATGAAGCCTACCTGAAGCGCAGACAACTGGAGATGCCGCGCGGAACGCTG
CCCTTGCATGCACTCCGGCGGCCTGGCACTGGAGGTGGCTACCGTATGGATGGCTGGGGTGGCCCTGAGG
AGCTGGGCCTGGCACCAGCACCCAACCCACGGCGTGTTATGTCCCAGGAGCACCTTCTGGGTGATGGTAG
CCGAGCTTCCCGCTATGAGTTCACGTTGCCTCGAGCGCGCCTGGTGTCTCAGGAACACCTGCTGCTGTCC
TCACCTGAGGCGCTTCGCCAGAGTCGCGAGCACCTGCTGTCACCCCCACGAAGTCCTGCACTGCCCCCAG
ATCCCACCACCCGGGCCAGCCTGGCTGCCTCACACTCCAACCTGCTGCTAGGGCCTGGGGGCCCCCCCAC
ACCCCTGCATGGGTTGCCTCCGTCAGGCCTGCATGCCCACCATCACCATGCCCTTCATGGCTCTCCTCAG
CCAGCCTGGATGTCTGATGCGGGCGGGGGTGGGGGCACACTGGCCCGCAGGCCACCCTTCCAGCGCCAGG
GCACCCTGGAGCAGCTGCAGTTCATTCCTGGGCACCACCTGCCCCAGCACCTGCGCACTGCCAGCAAGAA
CGAAGTGACTGTCTGA

Translation (541 aa):
MPALLLLGTVALLASAAGPAGARPSNDTSSVAPGPLPALLAHLRRLTGALAGGGSAAGTSANATKTSPAS
GTGAAARAPPPAELCHGYYDVMGQYDATFNCSTGSYRFCCGTCHYRFCCEHRHMRLAQASCSNYDTPRWA
TTPPPLAGGAGGAGGAGGGPGPGQAGWLEGGRAGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAF
SKASRAPRAHREINVPRALVDILRHQAGPATRPDRARSSSLTPGLGGPDSMAPRTPKNLYNTMKPSNLDW
RAMPPPSPSLHYSTLSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRQLEMPRGTL
PLHALRRPGTGGGYRMDGWGGPEELGLAPAPNPRRVMSQEHLLGDGSRASRYEFTLPRARLVSQEHLLLS
SPEALRQSREHLLSPPRSPALPPDPTTRASLAASHSNLLLGPGGPPTPLHGLPPSGLHAHHHHALHGSPQ
PAWMSDAGGGGGTLARRPPFQRQGTLEQLQFIPGHHLPQHLRTASKNEVTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH