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Report for CCDS52821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52821.1 Public Mus musculus 9 Lrrc49 23 108 98 CCDS HistoryNCBI Gene:102747Re-query CCDS DB by CCDS ID:52821.1Re-query CCDS DB by GeneID:102747See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166168.7 ENSMUSP00000128842.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166168.7Link to Ensembl Protein Viewer:ENSMUSP00000128842.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166168Re-query CCDS DB by Protein ID:ENSMUSP00000128842
Original member Current member NCBI NM_001146047.1 NP_001139519.1 Accepted alive Link to Nucleotide Sequence:NM_001146047.1Link to Protein Sequence:NP_001139519.1Re-query CCDS DB by Nucleotide ID:NM_001146047Re-query CCDS DB by Protein ID:NP_001139519Link to BLAST:NP_001139519.1

Chromosomal Locations for CCDS 52821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 60587688 60587891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60593606 60593759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60598086 60598195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60601303 60601488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60602579 60602816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60610258 60610421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60615094 60615177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60621569 60621716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60649480 60649541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60666289 60666432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60671295 60671361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60677080 60677283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60680069 60680171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60680505 60680702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60685035 60685122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60687139 60687195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60687411 60687440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGTCGGGGCTCCAAAGCCTGAGGTACAAGGTGAACTGTGGACTTCATCTGGTTATTCAAACGTCGTCAC
TTTCTGACAAAAACAAAGTTGAATTCAGGCTTAACAGAGAAACACCACCATTTCCTGGTAGACTGTTACA
GCATGACCTGGAGAGGAACTACTCAAGCAGGCAAGGAGACGGAAGAGTAATAAGTCCTTCGCCTCGTAAT
AAGTCATCATGCATCTCATCCACAACTAACGTGACAGACCTCTGTGGGCTGGACATGAGAGCTGCCACAA
CCTCCTTGTCAGCATTTGGAGACTCTTCCATTCAGACACCTTCAAAGCCGAGAATCCGGCAGGGCTGTCA
TAGTGCTGGCCCCAATGTATCTGGTGACCACATTAGTCTGGTGAGCTCATCCATGCCGGCGTTTCCTATT
CTCCAGCGCTCTTCTGAAGAGAAAACACTTTACTCAGACAGGCTGACCCTAGAAAGACAAAAGTTGACTG
TGTGCCCTATCATCGACGGGGAAGAGCACCTTCGTTTGTTGAACTTTCAGCACAATTTTATAACTCGGAT
CCAAAATATTTCTAATCTACAGAGGCTAATATTCTTGGACTTATATGATAACCAGATTGAAGAAATTAGT
GGACTTTCTACTCTGAAATCCCTTCGTGTCCTCCTGTTAGGGAAAAACAGAATCAAGAAAATCTCAAATC
TGGAGAATCTAAAAAATTTAGATGTCTTGGACCTTCATGGAAATCAGATTACCAAAATTGAAAATGTTAA
TCATTTGTGTGATTTGAGAGTTCTAAACCTTGCCAGGAATCTCTTGAGTCATGTTGACAATCTCAACGGC
CTGGATTCACTAACGGAACTTAACCTTCGGCACAACCAGATCACCTTTGTGAGAGATGTGGATAATTTGC
CCTGCCTCCAACGCCTCTTCCTCAGCTTCAACAATATAACTAGCTTTGAAAGTGTTTCCTGCCTTGCCGA
GTCAACTTCCCTCTCGGACATCACCTTTGATGGCAACCCAATAGCTCAAGAGTCATGGTACAAACACACG
GTCCTTCAGAATATGATGCAGCTGCGCCAGCTAGACATGAAGAGAATCACGGAAGAAGAAAGACGCGTGG
CATCTGTTGTGGCCAAAAAAGAGGAGGAGAAGAAGAGGGAGAGTCACAAGCAGTCCTTGCTGAAGGAGAA
GAAAAGGTTAACCATTAACAATGTCGCTCGAAAGTGGGACTTGCAGCAGCGAGTAGCCAACATTGCCAGC
ACTCAGGACAGAAAGGACTCGGAGTCTCCGCCTCAGGAATCCTGTCAGCTCGACGGAGGCAACATCTCTG
CCTTTCCAGAGGAAGCAGGGTCTCTAGATGCAGGGCTCAGCAGTGCGTTACAAGGCTTGTCTGTCACAGA
AACACACTTGGTGGAGATAGACGGAGAAACCCTCTCACTGTACGGCTCAGGGGCGCTGGAATGCCTGGAT
CGAAACTGGAGTGTTCAAACAGCCGGCATGGTCACCACGGTCTCATTCACGTTCATCGAGTTTGATGAAA
TTGTCCAAGTACTTCCCAAACTGAAGATGAAGTTTCCAAATTCTCTGCACCTTAAATTCAGGGAGACCAA
CCTTGTGATGCTGCAGCAGTTCAATGCCCTGGCACAGCTGCGTCGGGTTGACCAGTTGACAATCGATCCT
CAGGGAAACCCAGTGGTCAACTTTACACTCTGGAAGTACTACGTGCTGTTCAGGCTCAGCCACTTCAGCA
TGCAGAAAATAAATGGAACAGAGGTGACTCAAAATGACATGATAATGGCTGAAAGGCTCTTTGGAATCTT
AGCACATGTAGCATCCTCCGAGCTGCCCCAGTACCGCATGATTTCAATTCTGGGTGATGCCAGGAAAAAG
CAATTCCGATATCTACTGGAAAGCAAAGGTAAAAAGCCTGGCATCATCTGTGAGGAGACCAGTGACAGCA
AGAGGTTCTTGGGGGAAAACACGAACCGCGCTACCCTGAATTACACCACCCGAGAATTCTACCACGAGAA
GCTGGAAGAAATAAAGGACAAGAAGAAGTTCTGCAGGTTGTATGTAGAAGACCTGGTGAAGGAAGCCACA
GCCATCAACATGAAAAACGAGGCTCTGCAGAAGCTGTGGCCACAGATGTTCATCGAGCTTGTGAGAGACG
CTGTCATAGAGATCCGCAGCAAGGATTCCTACATGAAACTCTGCCTGCAGCAGATCACTGACCAGAAATA
G

Translation (746 aa):
MSGLQSLRYKVNCGLHLVIQTSSLSDKNKVEFRLNRETPPFPGRLLQHDLERNYSSRQGDGRVISPSPRN
KSSCISSTTNVTDLCGLDMRAATTSLSAFGDSSIQTPSKPRIRQGCHSAGPNVSGDHISLVSSSMPAFPI
LQRSSEEKTLYSDRLTLERQKLTVCPIIDGEEHLRLLNFQHNFITRIQNISNLQRLIFLDLYDNQIEEIS
GLSTLKSLRVLLLGKNRIKKISNLENLKNLDVLDLHGNQITKIENVNHLCDLRVLNLARNLLSHVDNLNG
LDSLTELNLRHNQITFVRDVDNLPCLQRLFLSFNNITSFESVSCLAESTSLSDITFDGNPIAQESWYKHT
VLQNMMQLRQLDMKRITEEERRVASVVAKKEEEKKRESHKQSLLKEKKRLTINNVARKWDLQQRVANIAS
TQDRKDSESPPQESCQLDGGNISAFPEEAGSLDAGLSSALQGLSVTETHLVEIDGETLSLYGSGALECLD
RNWSVQTAGMVTTVSFTFIEFDEIVQVLPKLKMKFPNSLHLKFRETNLVMLQQFNALAQLRRVDQLTIDP
QGNPVVNFTLWKYYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRMISILGDARKK
QFRYLLESKGKKPGIICEETSDSKRFLGENTNRATLNYTTREFYHEKLEEIKDKKKFCRLYVEDLVKEAT
AINMKNEALQKLWPQMFIELVRDAVIEIRSKDSYMKLCLQQITDQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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