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Report for CCDS20540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20540.1 Public Mus musculus 6 Pianp 23 108 98 CCDS HistoryNCBI Gene:319352Re-query CCDS DB by CCDS ID:20540.1Re-query CCDS DB by GeneID:319352See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032479.10 ENSMUSP00000032479.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032479.10Link to Ensembl Protein Viewer:ENSMUSP00000032479.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032479Re-query CCDS DB by Protein ID:ENSMUSP00000032479
Original member Current member EBI ENSMUST00000162170.7 ENSMUSP00000123940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162170.7Link to Ensembl Protein Viewer:ENSMUSP00000123940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162170Re-query CCDS DB by Protein ID:ENSMUSP00000123940
Original member Current member EBI ENSMUST00000160704.7 ENSMUSP00000124160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160704.7Link to Ensembl Protein Viewer:ENSMUSP00000124160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160704Re-query CCDS DB by Protein ID:ENSMUSP00000124160
Original member Current member NCBI NM_001145926.1 NP_001139398.1 Accepted alive Link to Nucleotide Sequence:NM_001145926.1Link to Protein Sequence:NP_001139398.1Re-query CCDS DB by Nucleotide ID:NM_001145926Re-query CCDS DB by Protein ID:NP_001139398Link to BLAST:NP_001139398.1
Original member Current member NCBI NM_001145927.1 NP_001139399.1 Accepted alive Link to Nucleotide Sequence:NM_001145927.1Link to Protein Sequence:NP_001139399.1Re-query CCDS DB by Nucleotide ID:NM_001145927Re-query CCDS DB by Protein ID:NP_001139399Link to BLAST:NP_001139399.1
Original member Current member NCBI NM_175696.4 NP_783627.2 Accepted alive Link to Nucleotide Sequence:NM_175696.4Link to Protein Sequence:NP_783627.2Re-query CCDS DB by Nucleotide ID:NM_175696Re-query CCDS DB by Protein ID:NP_783627Link to BLAST:NP_783627.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139398.1 278 Q6P1B3 278 100% 0 0
NP_001139399.1 278 Q6P1B3 278 100% 0 0
NP_783627.2 278 Q6P1B3 278 100% 0 0

Chromosomal Locations for CCDS 20540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124998973 124998977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124999235 124999740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125000654 125000735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125001427 125001648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125001963 125001984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGTGGTCTGCTCAACTGCTGTCCCAACTCCTCCCTCTCTGGCCACTGCTGTTGCTGTCCGTATTACCAC
CTGCTCAGGGCTCCTCCCATCGATCCCCACCAGCCCCAGCCCGCCCCCCCTGCGTCCGGGGTGGGCCCTC
AGCCCCTCGCCATGTGTGTGTTTGGGAGCGGGCGCCTCCGCCAAGCCGATCCCCACGGGTCCCAAGATCA
CGTCGGCAGGTTGTGCCAGGCACTGCCCCTCCTGCTACCCCATCAGGCTTTGAAGAGGGGCCTCCCTCAT
CTCAGTACCCTTGGGCTATAGTGTGGGGTCCCACAGTATCTCGGGAGGATGGAGGGGACCCCAACTCGGT
CAATCCTGGATTTCTGCCTCTGGACTATGGTTTTGCAGCCCCACATGGGCTGGCTACTCCGCACCCTAAC
TCAGACTCCATGCGGGATGACGGAGACGGGCTCATCCTTGGGGAAACACCTGCTACCTTGAGGCCCTTCC
TGTTTGGAGGGCGTGGAGAAGGTGTGGACCCTCAGCTTTATGTCACGATCACCATATCCATCATCATCGT
TCTTGTGGCTACCGGCATCATCTTCAAGTTCTGCTGGGACCGTAGCCAGAAGCGGCGCAGGCCCTCAGGG
CAGCAAGGTGCCCTGAGGCAGGAGGAGAGTCAGCAACCACTGACAGACCTGTCTCCTGCTGGAGTCACTG
TGCTGGGGGCTTTTGGGGACTCGCCTACCCCCACCCCTGACCATGAGGAACCCCGAGGGGGACCCCGGCC
TGGGATGCCCCAGCCTAAGGGGGCTCCAGCCTTCCAGTTGAACCGGATTCCCCTGGTGAATCTGTGA

Translation (278 aa):
MWSAQLLSQLLPLWPLLLLSVLPPAQGSSHRSPPAPARPPCVRGGPSAPRHVCVWERAPPPSRSPRVPRS
RRQVVPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSVNPGFLPLDYGFAAPHGLATPHPN
SDSMRDDGDGLILGETPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSG
QQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLNRIPLVNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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