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Report for CCDS52491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52491.1 Public Mus musculus 8 Dlgap2 23 108 98 CCDS HistoryNCBI Gene:244310Re-query CCDS DB by CCDS ID:52491.1Re-query CCDS DB by GeneID:244310See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000152652.7 ENSMUSP00000123078.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152652.7Link to Ensembl Protein Viewer:ENSMUSP00000123078.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152652Re-query CCDS DB by Protein ID:ENSMUSP00000123078
Original member Current member NCBI NM_001145965.1 NP_001139437.1 Accepted alive Link to Nucleotide Sequence:NM_001145965.1Link to Protein Sequence:NP_001139437.1Re-query CCDS DB by Nucleotide ID:NM_001145965Re-query CCDS DB by Protein ID:NP_001139437Link to BLAST:NP_001139437.1

Chromosomal Locations for CCDS 52491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 14096124 14096141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14257972 14258026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14531029 14531061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14695115 14695180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14726929 14727998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14743250 14743461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14773234 14773381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14778196 14778415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14822343 14822695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14823574 14823615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14829869 14829954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14831233 14831648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14839699 14839790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14843498 14843650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14846490 14846708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3183 nt):
ATGTCTGCTCTGAGGAAGGTTCTGCCCGGCATCCTGCAGAAGCATTGCTGCATCTTACCAGACAGGAACA
CAGAGTCTCAGTGCACCCTTTGTGGAGAGCCAGAAGAGGAGGAAGGAGGAGACTTGGCCCAGCCGGGCCT
CAGCTTCCCGGGTCCAGCAGAAGAGGACATAGACCAGCAGTACTCATGGTCTCCAACGCAGCACTTCAAT
GAAGAGAGGTACTCACCCGCACCCAGGAACATGAAAGGGTTAACCGGAAGCCGGAACCAGCCTCAGCTGT
GTGCGGGTCACACCTGTGGCCTGTCACCCCCTGATGACTGCGAGCACCCCCATGATCACATGCATCATGG
GTCAGATGTGCGGCAGCCTTATCTCCTTAGCCCAGCTGAGAGCTGCCCAATGGACCACCACCGTTGCTCG
CCCAGGAGCTCCGTCCACTCAGAGTGCATGATGATGCCTGTGATGTTGGGTGACCACGTATCCAGTAGCA
CCTTCCCTAGAATGCACTACAGCTCACACTATGACACAAGGGATGATTGCGCCATGTCCCACACAAGTAC
AAAGGTAAACCGCATCCCCGCCAACCTCTTAGACCAGTTTGAGAAACAGCTCCCCCTGCACCGGGATGGT
TTCCACACACTGCAGTACCAGAGGGCCTCGGCTGCCACGGAACAGCGGAATGAGAGTCCAGGCAGAATCC
GGCATTTGGTCCACTCCGTTCAGAAACTTTTCACCAAGTCTCATTCTTTGGAGGGATCGTCCAAGAGCAA
CATCAATGGGACCAAGAGTGACAGTCGTGTGGATGACCACCACCAGAGTCACCTTTCCAAACACAGCAAA
AGGAGTAAAAGCAAGGAGCGGAAGCCAGAGAGCAAGCACAAGTCTGGTATGAGCAGCTGGTGGAGTTCTG
ACGACAACCTGGACAGTGACAGCACATACCGGACACCCAGCGTGGCGCACCGCCACCACATGGACCACAT
TCCCCACTGCTACCCTGAGGCGCTGCAGAGCCCATTTGGGGACCTCTCACTAAAGACTTCCAAAAGCAAC
AACGATGTTAAGTGCTCAGCCTGTGAAGGCTTGGCCCTCACGCCAGACACCAGGTACATGAAACGTAGCT
CCTGGTCCACGCTCACGGTGAGCCAGGCTAAGGAGGCCTACCGCAAGAGCTCCCTGAACTTGGACAAGCC
CCTGGTCCACCCAGAGATCAAGCCTTCCCTGCGGCCATGCCACTACCTCCAGGTGCCTCAGGACGATTGG
GGTGCGTACCCCACAGGCGGCAAAGAGGAGGAGATACCCTGCCGTAGGATGAGGAGCGGCAGCTACATAA
AAGCCATGGGTGACGAGGAGAGTGGGGAGTCAGACTCCAGCCCCAAAACATCCCCGACGGTGGCCATCCG
GCCGGAGCCGCTGCTGAAGCCCATCATACAAAGACCACTTGGAGACCACCAAACCCAGAGCTACCTACAA
GCTGCCACTGAGGTGCCTGTCGGTCACAGCCTGAACCCATCAATCAACTACAACTCTCCGAAGTTCCGGT
CCAGAAACCAGAGCTACATGCGGGCTGTGAGCACCCTGAGCCAGGCCAGCTGTGTGAGCCAGATGAGTGA
AGCGGAAGTTAACGGGCAGTTCGAGTCTGTATGTGAATCTGTCTTCAGTGAAGTTGAATCTCAGGCCATG
GATGCTCTTGACCTTCCTGGGTGTTTCCGAACAAGGAGTCACAGTTACCTTCGAGCCATCCAAGCTGGTT
ACTCCCAAGACGATGAATGTATTCCCGTGATGACATCATCCAACATGACGTCAACCATCAGGTCAACAGC
AGCTGTCTCCTACACAAATTACAAGAAGACGCCTCCCCCGGTGCCTCCACGGACCACCTCCAAGCCTCTG
ATCTCTGTGACGGCCCAGAGCAGCACGGAATCGACACAGGATGCCTACCAGGACAGCCGTGCCCAGAGGA
TGTCCCCCTGGCCCCAAGATAGCCGTGGCGGCCTCTACAACTCCATGGACAGTCTAGACAGCAACAAGGC
CATGAATTTGGCTCTGGAAACAGCTGCAGCCCAGCGCCACGCGGCGGACACCCAGAGCAGCTCCACACGG
AGCATCGACAAGGCGGTCCTGGCATCCAAGGCTGAAGAGCTCCTGAAAAGTCGCTGCTCCTCCATCGGGG
TCCAGGATTCTGAATTCCCCGATCATCAACCCTACCCAAGGTCAGATGTAGAAACAGCCACGGATTCCGA
CACGGAGAGCAGAGGCCTAAGGGAGTACCACTCTGTTGGTGTGCAAGTAGAAGACGAAAAACGGCACGGC
CGTTTCAAGCGTTCCAACAGCGTCACAGCCGCTGTGCAGGCTGACTTAGAGCTGGAGGGTTTCCCTGGGC
ATGTCAGCATGGAGGACAAGGGCCTGCAGTTCGGATCCTCCTTCCAACGACATTCGGAGCCCAGTACCCC
GACCCAGTATGGGGCACTGAGGACTGTGCGGACGCAGGGCCTCTTCAGTTACAGGGAGGACTACAGGACA
CAGGTGGACACTTCTACTCTGCCACCACCGGATCCCTGGCTGGAGCCATCCCTGGACACGGTGGAGACCG
GGAGGATGTCTCCGTGCCGGAGAGATGGCTCGTGGTTTCTGAAACTGCTGCACACGGAGACGAAGAGGAT
GGAAGGCTGGTGCAAAGAGATGGAGAGAGAAGCAGAGGAGAATGACCTCTTGGAAGACATTCTAGGAAAG
ATCAGGAGTGCTGTAGGAAGTGCTCAGCTGCTCATGTCCCAGAAGTTCCAGCAGTTTTACTGGCTTTGTC
AGCAGAACATGGACCCCAGCGCCATGCCAAGACCCACCTCACAGGATCTAGCTGGCTATTGGGATATGCT
GCAGCTGTCTGTGGAAGATGTCAGCATGAAGTTTGACGAGCTGCACCAGCTGAAGCTCAATGACTGGAAG
ATAATAGAGTCACCCGAAAGAAAGGAAGAAAGGAAGATCCCCCCTCCAATACCAAAGAAGCCCCCCAAGG
GGAAATTCCCCATCACGAGGGAAAAGTCCTTGGACCTGCCAGACAGACAGCGCCAGGAAGCCCGGCGCCG
GCTCATGGCAGCCAAGAGAGCCGCCTCGTTCCGCCAGAACTCTGCTACGGAGAGGGCAGACAGCATCGAG
ATCTACATCCCTGAGGCCCAGACGCGGCTCTGA

Translation (1060 aa):
MSALRKVLPGILQKHCCILPDRNTESQCTLCGEPEEEEGGDLAQPGLSFPGPAEEDIDQQYSWSPTQHFN
EERYSPAPRNMKGLTGSRNQPQLCAGHTCGLSPPDDCEHPHDHMHHGSDVRQPYLLSPAESCPMDHHRCS
PRSSVHSECMMMPVMLGDHVSSSTFPRMHYSSHYDTRDDCAMSHTSTKVNRIPANLLDQFEKQLPLHRDG
FHTLQYQRASAATEQRNESPGRIRHLVHSVQKLFTKSHSLEGSSKSNINGTKSDSRVDDHHQSHLSKHSK
RSKSKERKPESKHKSGMSSWWSSDDNLDSDSTYRTPSVAHRHHMDHIPHCYPEALQSPFGDLSLKTSKSN
NDVKCSACEGLALTPDTRYMKRSSWSTLTVSQAKEAYRKSSLNLDKPLVHPEIKPSLRPCHYLQVPQDDW
GAYPTGGKEEEIPCRRMRSGSYIKAMGDEESGESDSSPKTSPTVAIRPEPLLKPIIQRPLGDHQTQSYLQ
AATEVPVGHSLNPSINYNSPKFRSRNQSYMRAVSTLSQASCVSQMSEAEVNGQFESVCESVFSEVESQAM
DALDLPGCFRTRSHSYLRAIQAGYSQDDECIPVMTSSNMTSTIRSTAAVSYTNYKKTPPPVPPRTTSKPL
ISVTAQSSTESTQDAYQDSRAQRMSPWPQDSRGGLYNSMDSLDSNKAMNLALETAAAQRHAADTQSSSTR
SIDKAVLASKAEELLKSRCSSIGVQDSEFPDHQPYPRSDVETATDSDTESRGLREYHSVGVQVEDEKRHG
RFKRSNSVTAAVQADLELEGFPGHVSMEDKGLQFGSSFQRHSEPSTPTQYGALRTVRTQGLFSYREDYRT
QVDTSTLPPPDPWLEPSLDTVETGRMSPCRRDGSWFLKLLHTETKRMEGWCKEMEREAEENDLLEDILGK
IRSAVGSAQLLMSQKFQQFYWLCQQNMDPSAMPRPTSQDLAGYWDMLQLSVEDVSMKFDELHQLKLNDWK
IIESPERKEERKIPPPIPKKPPKGKFPITREKSLDLPDRQRQEARRRLMAAKRAASFRQNSATERADSIE
IYIPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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