NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS92438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92438.1 Public Homo sapiens 18 SPIRE1 24 110 108 CCDS HistoryNCBI Gene:56907Re-query CCDS DB by CCDS ID:92438.1Re-query CCDS DB by GeneID:56907See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309836.9 ENSP00000309661.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000309836.9Link to Ensembl Protein Viewer:ENSP00000309661.5Re-query CCDS DB by Nucleotide ID:ENST00000309836Re-query CCDS DB by Protein ID:ENSP00000309661
Original member Current member NCBI NM_001394324.1 NP_001381253.1 Accepted alive Link to Nucleotide Sequence:NM_001394324.1Link to Protein Sequence:NP_001381253.1Re-query CCDS DB by Nucleotide ID:NM_001394324Re-query CCDS DB by Protein ID:NP_001381253Link to BLAST:NP_001381253.1

Chromosomal Locations for CCDS 92438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12449638 12449896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12452255 12452391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12452485 12452512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12453068 12453138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12454346 12454483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12463351 12463493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12464868 12464958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12479699 12479871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12493072 12493201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12496016 12496102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12506477 12506641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12512454 12512531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12535476 12535601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12635062 12635073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGAAACAGAGTTGTGTGCTGCTCATCTCCCTACTGAATCAGATGCACCAAATCATTATCAGGCAGTAT
GTCGTGCACTGTTTGCAGAAACAATGGAGCTCCATACATTTCTGACCAAAATTAAGAGTGCGAAAGAGAA
TCTTAAGAAGATTCAAGAAATGGAAAAGAGCGATGAATCTAGCACAGACTTGGAAGAGCTGAAAAACGCT
GACTGGGCACGATTCTGGGTACAGGTGATGAGGGATTTGAGGAATGGGGTAAAACTTAAGAAGGTCCAAG
AGCGGCAGTACAACCCTTTGCCCATTGAATATCAGCTCACCCCTTATGAGATGTTAATGGATGACATTCG
CTGCAAAAGATACACCTTGCGAAAAGTGATGGTGAATGGTGATATTCCCCCTCGGTTAAAAAAGAGTGCT
CATGAAATCATCCTCGACTTCATCAGATCCAGACCTCCTTTAAATCCAGTCTCAGCCAGAAAACTGAAAC
CAACTCCACCACGGCCACGGAGCCTCCATGAAAGAATATTAGAAGAAATTAAAGCAGAAAGAAAGCTGCG
GCCTGTATCACCAGAGGAGATTAGACGTAGCAGATTAGATGTGACTACCCCTGAATCTACAAAGAATCTT
GTGGAGTCATCTATGGTGAATGGAGGTTTGACATCACAAACAAAAGAAAACGGGTTAAGTACCTCACAGC
AGGTGCCTGCACAGCGGAAGAAGCTCCTCAGAGCCCCAACTCTGGCCGAACTGGACAGCTCTGAGTCTGA
GGAAGAAACGCTGCACAAGTCGACCAGCAGCAGCAGCGTGTCTCCCTCTTTCCCTGAAGAGCCAGTCCTG
GAGGCCGTGTCCACAAGGAAGAAGCCTCCAAAATTCCTGCCCATATCATCAACACCCCAGCCAGAGAGAC
GGCAGCCACCCCAGAGACGACATTCCATTGAAAAGGAAACGCCTACTAACGTGAGGCAGTTCCTGCCGCC
TTCCAGGCAGAGTTCCCGCTCTCTTGAGGAATTCTGCTACCCAGTGGAATGCCTCGCTCTTACTGTGGAA
GAAGTGATGCATATTCGCCAGGTCCTGGTGAAGGCAGAGCTGGAAAAATACCAACAGTATAAAGACATCT
ACACCGCCTTGAAAAAAGGAAAGCTCTGCTTTTGTTGCCGAACCAGGAGGTTTTCCTTCTTCACTTGGTC
TTATACCTGTCAGTTCTGTAAGAGGCCGGTGTGCTCACAGTGTTGCAAAAAGATGCGGCTGCCCTCCAAA
CCATACTCCACTCTTCCTATCTTTTCATTGGGACCTTCTGCTCTGCAAAGAGGGGAAAGTAGTATGAGGT
CAGAAAAACCCTCCACTGCCCATCATCGGCCACTTCGGAGCATTGCCAGGTTCTCCTCAAAATCTAAGTC
TATGGACAAATCAGATGAAGAACTCCAGTTTCCCAAAGAGTTGATGGAGGACTGGAGCACCATGGAGGTG
TGTGTGGACTGCAAGAAGTTCATTTCGGAAATCATCAGTTCAAGCCGGCGCAGTCTGGTGTTGGCCAACA
AAAGGGCCCGATTGAAAAGGAAAACGCAGTCTTTCTACATGTCCTCGCCAGGCCCCTCGGAGTACTGCCC
TTCAGAGAGGACGATCAGTGAGATCTGA

Translation (545 aa):
METELCAAHLPTESDAPNHYQAVCRALFAETMELHTFLTKIKSAKENLKKIQEMEKSDESSTDLEELKNA
DWARFWVQVMRDLRNGVKLKKVQERQYNPLPIEYQLTPYEMLMDDIRCKRYTLRKVMVNGDIPPRLKKSA
HEIILDFIRSRPPLNPVSARKLKPTPPRPRSLHERILEEIKAERKLRPVSPEEIRRSRLDVTTPESTKNL
VESSMVNGGLTSQTKENGLSTSQQVPAQRKKLLRAPTLAELDSSESEEETLHKSTSSSSVSPSFPEEPVL
EAVSTRKKPPKFLPISSTPQPERRQPPQRRHSIEKETPTNVRQFLPPSRQSSRSLEEFCYPVECLALTVE
EVMHIRQVLVKAELEKYQQYKDIYTALKKGKLCFCCRTRRFSFFTWSYTCQFCKRPVCSQCCKKMRLPSK
PYSTLPIFSLGPSALQRGESSMRSEKPSTAHHRPLRSIARFSSKSKSMDKSDEELQFPKELMEDWSTMEV
CVDCKKFISEIISSSRRSLVLANKRARLKRKTQSFYMSSPGPSEYCPSERTISEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH