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Report for CCDS23733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23733.1 Public Mus musculus 10 Rps12 23 108 98 CCDS HistoryNCBI Gene:20042Re-query CCDS DB by CCDS ID:23733.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000220070.1 ENSMUSP00000151271.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220070.1Link to Ensembl Protein Viewer:ENSMUSP00000151271.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220070Re-query CCDS DB by Protein ID:ENSMUSP00000151271
Original member Current member EBI ENSMUST00000218107.1 ENSMUSP00000151305.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218107.1Link to Ensembl Protein Viewer:ENSMUSP00000151305.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218107Re-query CCDS DB by Protein ID:ENSMUSP00000151305
Original member NCBI NM_011295.6 NP_035425.2 Updated not alive Link to Nucleotide Sequence:NM_011295.6Link to Protein Sequence:NP_035425.2Re-query CCDS DB by Nucleotide ID:NM_011295Re-query CCDS DB by Protein ID:NP_035425
Current member NCBI NM_011295.7 NP_035425.2 Accepted alive Link to Nucleotide Sequence:NM_011295.7Link to Protein Sequence:NP_035425.2Re-query CCDS DB by Nucleotide ID:NM_011295Re-query CCDS DB by Protein ID:NP_035425Link to BLAST:NP_035425.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035425.2 132 P63323 132 100% 0 0

Chromosomal Locations for CCDS 23733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 23785211 23785273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23785576 23785677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23785902 23786004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23786764 23786880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 23786994 23787007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGCCGAGGAAGGCATAGCTGCTGGAGGTGTAATGGACGTCAACACTGCTCTACAAGAGGTGCTGAAGA
CCGCCCTCATCCACGATGGCCTAGCACGTGGCATACGCGAAGCTGCCAAAGCCTTAGACAAGCGCCAAGC
CCATCTGTGTGTGCTCGCATCCAACTGTGATGAGCCCATGTATGTCAAGCTGGTGGAGGCACTTTGTGCT
GAGCACCAAATCAACCTGATAAAGGTTGATGACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAA
TCGATCGAGAGGGCAAACCACGGAAGGTGGTTGGTTGCAGTTGCGTAGTGGTTAAGGACTATGGCAAAGA
ATCTCAGGCCAAGGATGTCATCGAGGAATACTTCAAGTGCAAGAAATAA

Translation (132 aa):
MAEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCA
EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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