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Report for CCDS70217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70217.1 Public Mus musculus 11 Polr2a 23 108 98 CCDS HistoryNCBI Gene:20020Re-query CCDS DB by CCDS ID:70217.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058470.15 ENSMUSP00000050771.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058470.15Link to Ensembl Protein Viewer:ENSMUSP00000050771.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000058470Re-query CCDS DB by Protein ID:ENSMUSP00000050771
Original member Current member NCBI NM_001291068.1 NP_001277997.1 Accepted alive Link to Nucleotide Sequence:NM_001291068.1Link to Protein Sequence:NP_001277997.1Re-query CCDS DB by Nucleotide ID:NM_001291068Re-query CCDS DB by Protein ID:NP_001277997Link to BLAST:NP_001277997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277997.1 1970 P08775 1970 100% 0 0

Chromosomal Locations for CCDS 70217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69734410 69735566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69735650 69735799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69735901 69736014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69736139 69736325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69736775 69736978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69737182 69737364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69737448 69737552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69739427 69739527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69739879 69740125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69740257 69740481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69740999 69741204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69741637 69741742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69741841 69742012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69742374 69742557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69742687 69742909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69743254 69743457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69743591 69743685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69743803 69743971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69744051 69744260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69744597 69744807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69744920 69745044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69745569 69745701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69745922 69746142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69746267 69746428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69746698 69746979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69747105 69747278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69747376 69747512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69747981 69748113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69758131 69758223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5913 nt):
ATGCACGGGGGTGGCCCCCCCTCCGGGGACAGCGCATGCCCGCTGCGCACCATCAAGAGAGTGCAGTTCG
GAGTCCTGAGTCCGGATGAATTGAAGCGGATGTCTGTGACAGAGGGTGGTATCAAATACCCAGAAACAAC
GGAGGGAGGTCGCCCCAAACTTGGGGGACTAATGGATCCACGGCAGGGGGTGATTGAGCGGACTGGCCGC
TGCCAAACATGTGCAGGAAACATGACCGAGTGTCCTGGCCACTTTGGCCACATCGAATTGGCCAAACCTG
TGTTTCATGTGGGCTTCCTGGTGAAGACAATGAAGGTTTTGCGCTGTGTCTGCTTCTTCTGCTCCAAACT
GCTTGTAGATTCTAATAACCCGAAGATTAAGGACATCCTGGCCAAATCTAAGGGGCAGCCAAAGAAACGG
CTTACGCATGTCTATGACCTGTGCAAGGGCAAAAACATCTGTGAAGGTGGAGAGGAGATGGACAACAAGT
TTGGTGTGGAGCAGCCGGAGGGTGATGAGGATCTGACCAAAGAGAAGGGCCATGGCGGCTGTGGGCGGTA
CCAACCCCGAATCCGGCGCTCTGGCCTAGAGTTGTATGCTGAATGGAAGCATGTTAATGAGGACTCTCAG
GAGAAAAAGATCTTGCTGAGTCCAGAACGAGTGCATGAAATCTTCAAACGCATCTCAGATGAGGAGTGTT
TTGTGTTGGGCATGGAGCCTCGCTATGCCCGGCCTGAGTGGATGATTGTCACAGTGTTGCCTGTGCCTCC
TCTCTCAGTGAGACCTGCTGTGGTGATGCAGGGTTCTGCTCGAAACCAGGATGATCTGACTCACAAACTG
GCTGACATTGTGAAGATCAACAATCAGCTGCGGCGGAACGAGCAGAATGGTGCAGCTGCCCATGTCATAG
CAGAAGATGTAAAACTTCTCCAGTTCCATGTGGCCACCATGGTGGACAATGAACTGCCCGGCTTACCCCG
TGCCATGCAGAAGTCTGGCCGTCCCCTCAAGTCCCTGAAGCAACGGTTGAAGGGCAAAGAAGGACGGGTT
CGAGGGAATCTAATGGGCAAGCGAGTGGACTTCTCAGCCCGCACTGTCATCACCCCTGACCCTAACCTAT
CCATTGACCAAGTGGGTGTGCCCCGCTCCATTGCTGCCAACATGACCTTTGCAGAGATTGTCACACCCTT
CAATATTGACAGACTTCAGGAATTAGTACGCAGGGGAAACAGCCAGTATCCAGGAGCCAAGTACATCATC
CGCGATAATGGCGATCGAATTGACTTGCGTTTCCATCCTAAGCCCAGTGACCTTCATCTGCAGACTGGCT
ATAAGGTGGAACGGCACATGTGTGATGGGGACATTGTTATCTTCAATCGTCAGCCAACTTTGCACAAAAT
GTCCATGATGGGGCATCGGGTCCGAATCCTCCCCTGGTCTACTTTTCGGTTGAATCTTAGTGTGACAACT
CCATACAATGCAGACTTTGATGGAGATGAGATGAATTTGCATCTGCCACAGTCTCTGGAAACACGGGCAG
AGATCCAAGAGTTGGCTATGGTGCCTCGAATGATTGTCACCCCCCAGAGCAATCGACCTGTCATGGGTAT
TGTGCAAGACACACTCACGGCAGTACGCAAATTCACTAAGAGAGATGTCTTCCTGGAGCGGGGTGAAGTC
ATGAACCTCTTAATGTTTCTGTCCACGTGGGATGGCAAGGTCCCACAACCAGCTATCCTCAAGCCCCGGC
CCCTGTGGACAGGCAAGCAGATCTTCTCCCTCATCATACCTGGACACATCAATTGTATCCGTACCCACAG
CACCCATCCTGATGATGAAGATAGTGGCCCTTACAAGCACATCTCTCCTGGGGACACCAAAGTTGTAGTG
GAGAATGGGGAGCTTATCATGGGCATCCTTTGTAAGAAGTCCCTGGGCACCTCAGCAGGCTCGCTGGTCC
ATATCTCCTACCTGGAGATGGGGCATGACATCACCCGCCTCTTCTACTCCAACATTCAGACTGTCATTAA
CAACTGGCTTCTCATCGAGGGTCATACCATTGGCATTGGGGACTCCATTGCAGATTCAAAGACTTACCAG
GACATTCAGAACACTATTAAGAAAGCTAAACAAGATGTAATAGAGGTCATTGAGAAGGCTCATAACAATG
AGCTAGAACCCACTCCAGGAAACACATTGCGTCAGACATTTGAGAATCAAGTGAATCGTATTCTCAATGA
TGCTCGAGACAAAACTGGCTCCTCTGCACAGAAATCCCTCTCTGAATATAACAACTTCAAGTCTATGGTG
GTGTCTGGAGCCAAGGGTTCCAAGATCAACATCTCCCAGGTCATTGCTGTTGTCGGGCAGCAGAATGTAG
AGGGCAAGCGGATCCCATTTGGATTCAAGCATCGGACTCTTCCTCACTTTATCAAGGATGATTATGGTCC
TGAGAGCCGAGGCTTTGTAGAAAATTCATACTTGGCTGGTCTCACACCCACTGAGTTCTTCTTCCATGCC
ATGGGAGGACGAGAAGGTCTCATTGACACGGCTGTTAAGACTGCTGAGACTGGGTATATTCAGCGAAGGC
TGATAAAGTCCATGGAGTCGGTGATGGTGAAATATGATGCAACTGTGAGGAACTCCATCAACCAGGTGGT
ACAGCTGCGCTATGGAGAGGACGGCCTGGCAGGGGAGAGTGTTGAGTTCCAGAATCTGGCTACACTTAAA
CCTTCTAATAAAGCTTTTGAGAAGAAGTTCCGTTTTGATTATACCAATGAGAGGGCCCTGCGGCGCACCC
TTCAGGAGGACCTGGTAAAGGATGTGCTGAGCAATGCCCATATACAGAATGAGCTGGAACGGGAATTTGA
ACGGATGCGTGAAGATCGGGAAGTGCTCAGGGTCATCTTCCCAACTGGTGACAGCAAGGTGGTCCTCCCT
TGTAACCTTCTGCGGATGATCTGGAATGCTCAGAAAATCTTCCACATCAACCCTCGCCTTCCCTCTGACC
TGCATCCCATCAAAGTGGTAGAGGGAGTCAAAGAATTGAGCAAGAAGTTGGTAATTGTGAATGGAGATGA
CCCACTAAGTCGGCAGGCACAGGAGAATGCCACATTGCTCTTCAACATCCACCTAAGATCCACACTCTGC
TCTCGCCGCATGGCTGAGGAGTTTCGGCTGAGTGGAGAGGCCTTTGACTGGCTGCTTGGGGAGATAGAGT
CCAAGTTCAACCAAGCCATTGCCCATCCTGGAGAAATGGTGGGAGCTCTGGCTGCTCAGTCTCTTGGAGA
ACCTGCCACTCAGATGACCCTGAACACTTTCCACTATGCTGGTGTATCTGCCAAGAATGTGACGCTGGGT
GTGCCTCGACTTAAGGAGCTTATCAACATTTCCAAGAAGCCAAAGACTCCTTCACTCACTGTCTTCCTGT
TAGGTCAATCTGCACGAGATGCTGAAAGAGCCAAGGACATTCTTTGCCGCTTGGAACATACAACATTGAG
GAAGGTGACTGCCAATACAGCCATCTACTATGACCCTAACCCCCAGAGCACAGTGGTGGCAGAAGATCAG
GAGTGGGTGAATGTGTACTATGAGATGCCCGACTTTGACGTGGCCCGGATATCTCCCTGGCTGCTGCGTG
TGGAGCTCGACCGAAAGCACATGACTGACCGGAAGCTTACCATGGAACAGATTGCTGAGAAAATCAATGC
AGGTTTTGGCGATGATTTGAATTGTATCTTCAACGATGATAATGCAGAGAAGCTGGTCCTTCGAATCCGC
ATCATGAACAGTGATGAAAACAAGATGCAAGAGGAGGAAGAGGTGGTGGATAAAATGGATGATGATGTCT
TCCTGCGATGCATTGAGTCCAACATGCTGACAGATATGACCCTGCAGGGTATCGAGCAGATCAGCAAGGT
GTACATGCACTTACCTCAGACAGACAACAAGAAGAAGATCATCATCACAGAGGATGGGGAGTTCAAGGCC
CTGCAGGAATGGATCTTAGAGACGGATGGTGTGAGCCTGATGCGGGTGCTGAGTGAGAAGGATGTAGACC
CTGTGCGCACCACGTCCAATGATATTGTGGAGATCTTCACGGTACTGGGCATTGAGGCTGTGCGGAAGGC
TCTGGAGCGAGAACTGTACCATGTCATCTCCTTTGATGGTTCTTATGTCAATTATCGGCATTTGGCGCTC
CTGTGTGACACTATGACATGCCGTGGCCACTTGATGGCCATCACTCGTCATGGGGTCAACCGCCAGGACA
CTGGACCGCTCATGAAATGCTCCTTTGAGGAAACGGTGGATGTCCTTATGGAAGCAGCAGCACATGGGGA
GAGTGACCCGATGAAGGGAGTCTCTGAGAATATTATGCTGGGCCAGCTCGCTCCAGCTGGTACTGGCTGT
TTTGACCTCCTGCTTGATGCTGAGAAGTGCAAATACGGCATGGAAATCCCCACCAATATCCCTGGCCTGG
GGGCTGCTGGACCTACCGGCATGTTCTTTGGCTCTGCACCCAGTCCGATGGGAGGAATATCTCCTGCAAT
GACACCCTGGAACCAGGGTGCAACTCCCGCCTATGGTGCCTGGTCCCCGAGTGTTGGGAGCGGGATGACC
CCAGGAGCGGCCGGCTTCTCTCCCAGTGCTGCATCTGATGCCAGTGGCTTCAGCCCAGGTTACTCCCCTG
CATGGTCTCCCACACCAGGCTCTCCGGGCTCCCCTGGACCCTCAAGCCCATACATCCCCTCACCAGGTGG
TGCTATGTCTCCCAGCTACTCACCGACATCACCAGCCTATGAGCCACGCTCCCCTGGGGGCTATACACCC
CAGAGCCCCTCCTACTCCCCTACTTCACCTTCCTACTCCCCAACCTCTCCATCTTACTCTCCAACCAGTC
CCAACTACAGCCCTACCTCTCCTAGCTACTCGCCCACCTCCCCTAGCTACTCGCCAACCTCTCCTTCCTA
CTCCCCCACCTCTCCAAGCTATTCCCCAACCTCTCCTAGCTACTCCCCAACCTCTCCAAGCTATTCTCCA
ACATCACCTAGCTATTCTCCAACTTCTCCCAGCTACTCACCGACATCTCCTAGCTACTCCCCAACTTCTC
CCAGCTACTCACCAACTTCACCAAGCTATTCTCCCACCTCCCCCAGCTACTCACCGACATCTCCCAGCTA
CTCACCAACTTCTCCAAGCTACTCACCAACTTCTCCAAGCTACTCACCCACCAGCCCTAACTATTCTCCA
ACTAGTCCCAACTATACCCCGACATCACCCAGCTACAGCCCAACCTCACCCAGTTACTCACCTACAAGTC
CCAACTATACACCCACCAGCCCTAATTACAGCCCAACCTCTCCAAGCTATTCCCCAACCTCACCCAGTTA
TTCCCCCACCTCACCAAGCTACTCCCCCTCCAGCCCACGATATACACCACAGTCTCCAACCTACACACCA
AGCTCACCAAGCTACAGTCCCAGCTCACCAAGCTACAGCCCCACTTCACCCAAGTACACCCCAACTAGTC
CTTCCTACAGTCCCAGCTCACCAGAGTACACCCCAGCTTCTCCCAAATACTCACCTACAAGCCCTAAATA
TTCACCCACTTCTCCCAAGTATTCTCCTACCAGCCCCACTTACTCACCTACCACCCCAAAATATTCTCCA
ACCTCCCCGACATACTCACCAACCTCTCCAGTCTATACCCCGACCTCTCCCAAGTACTCCCCAACCAGCC
CTACCTACTCGCCCACTTCTCCCAAGTACTCGCCCACCAGTCCCACCTACTCACCCACCTCTCCCAAGGG
CTCCACCTACTCTCCCACTTCTCCTGGCTACTCACCCACTAGCCCCACCTACAGCCTCACCAGCCCAGCC
ATCAGCCCAGATGACAGCGATGAGGAGAACTGA

Translation (1970 aa):
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR
CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKR
LTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ
EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKL
ADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRV
RGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTT
PYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEV
MNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVV
ENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQ
DIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMV
VSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLK
PSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLP
CNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLC
SRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLG
VPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQ
EWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKA
LQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLAL
LCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGC
FDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMT
PGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTP
QSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP
TSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTP
SSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSP
TSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA
ISPDDSDEEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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