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Report for CCDS50755.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50755.1 Public Mus musculus 2 Ccm2l 23 108 98 CCDS HistoryNCBI Gene:228788Re-query CCDS DB by CCDS ID:50755.1Re-query CCDS DB by GeneID:228788See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 50755.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109800.1 ENSMUSP00000105425.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109800.1Link to Ensembl Protein Viewer:ENSMUSP00000105425.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109800Re-query CCDS DB by Protein ID:ENSMUSP00000105425
Original member Current member NCBI NM_145536.3 NP_663511.2 Accepted alive Link to Nucleotide Sequence:NM_145536.3Link to Protein Sequence:NP_663511.2Re-query CCDS DB by Nucleotide ID:NM_145536Re-query CCDS DB by Protein ID:NP_663511Link to BLAST:NP_663511.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663511.2 481 Q8VCC6-1 481 100% 0 0

Chromosomal Locations for CCDS 50755.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153066007 153066036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153067760 153067927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153070641 153070724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153070822 153071005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153071758 153072212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153074772 153074907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153078482 153078611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153079393 153079531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153080909 153081028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGAATATGAAGCCAAGAAAGGGAAGAAGGGCTTTGTGTCCCCCATCCGAAGACTGGTGTTCCCGAAGG
CTGCACGCCAGGCTGCCTTCAGAAGCAGTGTCAGTCGCAGGCCCCTGCACTCTATGCCTCTTTATCCCCC
TGACTACCTCATCGACCCCCACATCCTGCTGTGTGACTACCTGGAGAAAGAGGTCAAGTTCCTGGGTCAC
CTCACCTGGGTGACTTCCTCACTGAACCCCTCCAGCCGAGACGAGCTCCTGCAGCTTCTGGACACTGCCA
GGCAGCTGAAGGAGTTGCCTCTGAAGACCACGCCAGAGCAGGACAGCATCCTGAGCCTGTCCGCACGCTG
CCTGCTGCTCACCTGGCGCGACAATGAGGAGCTCATCCTGCGCATCCCGACGCACGAGATTGCTGCTGCC
TCCTACCTGCAGGACGACGCTCTGCATCTGCTAGTGCTTAAGACTGGTCTGGGGGTGGACCCTGTGCCCG
CGGGCATGGATGGCAGCCCGGGAGGTTCGGGTCGCGATCCCGGCCCTCCGGGCGCCGCGCCCGAGAAACG
ACGGGTAGGCACAGCCGAGCGACGCCACACCATCTGCAGCCTGGACTGGCGCGTGGCGTGGGGCGGGGGC
GCGGGCGCCGAGGCCCGGGCGGCGGGAGGCGGCGGCAGCCTGGAGCGGCAGCGCGCGGGAGCGAGGGCGT
CGGGCAGCTGGGAGCGGCGACAGACGTTCAGTGGCAGCTGGGAGCGACGGCACGCGGGCGGAGGTGCGGG
CAAGCCGGGTGGCAGCTGGGAGCGGCGGCAGGCGAGTGGCGGCGTCGGCGGCAGCTGGGAGCGACGCCAC
CCGGGCCCCAACCCGCTGGATCCCCAGAACCACAGCCCCGACGCCTACTGCAACCTGGTCATTCTGGCTG
TGGCAAACAGGGATGCCGCTGAGGAATCCTGTGCGCTCATCTGTCAAGTCTTCCAGATCATCTACGGGGA
CCAGAGCATCGAGTGTGTAGACCGGGCCGGCTACCACTACAGATCCACACCAAAGCGGCCATGGCTCTCC
AGCTGCACAATGGCTCCCAGGACACATTTGAAGCGTGCTACAGTGGCGCATCCACACCGTCTTTCCACGG
CTCCCACTGCAGCAGTATCGACCACAGCAGCTGGGCCTTCGAGCAGCTACAGGATTACATGGTCACGCTG
CGGAGTAAGCTGGGTCCTCCTGAGATCCAGCAGTTTGCATTGCTGCTACGAGACTATCGTCTGGGGCTGC
CTATCCAGGACTACTGTGCAGGTCTGCAGAAACTCTATGGGGACCGACGGAAGTTCCTTCTCATTGGAAT
GCGGCCCTTCATCCCAGATCAGGACATCGGCTACTTCGAGGGCTTCCTGGAGAGTATGGGTATCCGCGAG
GGCGGAATCCTCACTGACAGCTTTGGCCGCATCAAGCGCAGCATGA

Translation (481 aa):
MEYEAKKGKKGFVSPIRRLVFPKAARQAAFRSSVSRRPLHSMPLYPPDYLIDPHILLCDYLEKEVKFLGH
LTWVTSSLNPSSRDELLQLLDTARQLKELPLKTTPEQDSILSLSARCLLLTWRDNEELILRIPTHEIAAA
SYLQDDALHLLVLKTGLGVDPVPAGMDGSPGGSGRDPGPPGAAPEKRRVGTAERRHTICSLDWRVAWGGG
AGAEARAAGGGGSLERQRAGARASGSWERRQTFSGSWERRHAGGGAGKPGGSWERRQASGGVGGSWERRH
PGPNPLDPQNHSPDAYCNLVILAVANRDAAEESCALICQVFQIIYGDQSIECVDRAGYHYRSTPKRPWLS
SCTMAPRTHLKRATVAHPHRLSTAPTAAVSTTAAGPSSSYRITWSRCGVSWVLLRSSSLHCCYETIVWGC
LSRTTVQVCRNSMGTDGSSFSLECGPSSQIRTSATSRASWRVWVSARAESSLTALAASSAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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