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Report for CCDS27319.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27319.1 Public Mus musculus 14 Pou4f1 23 108 98 CCDS HistoryNCBI Gene:18996Re-query CCDS DB by CCDS ID:27319.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27319.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053016.9 ENSMUSP00000060798.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053016.9Link to Ensembl Protein Viewer:ENSMUSP00000060798.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053016Re-query CCDS DB by Protein ID:ENSMUSP00000060798
Original member Current member NCBI NM_011143.4 NP_035273.3 Accepted alive Link to Nucleotide Sequence:NM_011143.4Link to Protein Sequence:NP_035273.3Re-query CCDS DB by Nucleotide ID:NM_011143Re-query CCDS DB by Protein ID:NP_035273Link to BLAST:NP_035273.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035273.3 421 P17208-1 421 100% 0 0

Chromosomal Locations for CCDS 27319.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 104465729 104466871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104467611 104467733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGATGTCCATGAACAGCAAGCAGCCTCACTTTGCCATGCATCCCACCCTCCCTGAGCACAAGTACCCGT
CGCTGCACTCCAGCTCCGAGGCCATCCGGCGGGCCTGCCTGCCCACGCCGCCGCTGCAGAGCAACCTCTT
CGCCAGCCTGGACGAGACGCTGCTGGCGCGGGCCGAGGCGCTGGCGGCCGTGGACATCGCGGTGTCCCAG
GGCAAGAGCCACCCTTTCAAGCCGGACGCCACGTACCACACGATGAATAGCGTGCCCTGCACGTCCACGT
CCACCGTGCCGCTGGCGCACCACCACCACCACCACCACCACCACCAGGCGCTCGAGCCCGGTGACCTGCT
GGACCACATCTCGTCGCCGTCGCTCGCGCTCATGGCCGGCGCAGGGGGCGCAGGCGCGGCGGGAGGCGGC
GGCGGCGCCCACGACGGCCCCGGGGGCGGAGGCGGACCGGGGGGCGGCGGTGGCCCGGGCGGCGGCGGCC
CCGGGGGTGGCGGCGGCGGCGGCGGCCCGGGGGGCGGCGGCGGCGGCCCGGGCGGCGGGCTCTTGGGCGG
CTCGGCGCATCCGCACCCGCACATGCACGGCCTGGGCCACCTGTCGCACCCCGCGGCGGCGGCGGCCATG
AACATGCCGTCCGGGCTGCCGCATCCCGGGCTCGTGGCCGCGGCGGCGCACCACGGCGCGGCGGCGGCAG
CGGCGGCGGCGGCGGCGGGGCAGGTGGCGGCGGCGTCGGCCGCGGCGGCGGTGGTGGGCGCGGCGGGCCT
GGCGTCCATCTGCGACTCGGACACGGACCCGCGCGAGCTCGAGGCGTTCGCCGAGCGCTTCAAGCAGCGG
CGCATCAAGCTGGGCGTGACGCAGGCCGACGTGGGCTCGGCGCTGGCCAACCTCAAGATCCCGGGCGTGG
GCTCGCTCAGCCAGAGCACCATCTGCAGGTTCGAGTCGCTCACGCTCTCGCACAACAACATGATCGCGCT
CAAGCCCATCCTGCAGGCGTGGCTGGAGGAGGCCGAGGGCGCGCAGCGTGAGAAAATGAACAAGCCGGAG
CTCTTCAACGGCGGCGAGAAGAAGCGCAAGCGGACTTCCATCGCCGCGCCCGAGAAGCGCTCCCTCGAGG
CCTATTTTGCCGTACAACCCCGGCCCTCGTCTGAGAAGATCGCCGCCATCGCCGAGAAACTGGACCTCAA
AAAGAACGTGGTGCGGGTGTGGTTTTGCAACCAGAGACAGAAGCAGAAGCGGATGAAATTCTCTGCCACT
TACTGA

Translation (421 aa):
MMSMNSKQPHFAMHPTLPEHKYPSLHSSSEAIRRACLPTPPLQSNLFASLDETLLARAEALAAVDIAVSQ
GKSHPFKPDATYHTMNSVPCTSTSTVPLAHHHHHHHHHQALEPGDLLDHISSPSLALMAGAGGAGAAGGG
GGAHDGPGGGGGPGGGGGPGGGGPGGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHGLGHLSHPAAAAAM
NMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQR
RIKLGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAEGAQREKMNKPE
LFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSAT
Y


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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