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Report for CCDS55017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55017.1 Public Homo sapiens 6 TDRD6 24 110 108 CCDS HistoryNCBI Gene:221400Re-query CCDS DB by CCDS ID:55017.1Re-query CCDS DB by GeneID:221400See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55017.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544460.5 ENSP00000443299.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544460.5Link to Ensembl Protein Viewer:ENSP00000443299.1Re-query CCDS DB by Nucleotide ID:ENST00000544460Re-query CCDS DB by Protein ID:ENSP00000443299
Original member Current member NCBI NM_001168359.2 NP_001161831.1 Accepted alive Link to Nucleotide Sequence:NM_001168359.2Link to Protein Sequence:NP_001161831.1Re-query CCDS DB by Nucleotide ID:NM_001168359Re-query CCDS DB by Protein ID:NP_001161831Link to BLAST:NP_001161831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161831.1 2066 O60522-2 2066 100% 0 0

Chromosomal Locations for CCDS 55017.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 46688129 46694174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46695821 46695945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46701858 46701887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6201 nt):
ATGTGCTCGACGCCCGGAATGCCGGCGCCGGGGGCCTCGCTGGCCCTGCGGGTGTCCTTCGTGGACGTGC
ATCCCGATGTGATCCCGGTGCAGCTGTGGGGGCTGGTGGGCGAGCGGCGGGGCGAGTACCTGCGGCTGAG
CCGGGAAATCCAGGAAGCGGCGGCCACGCGCGGCCAGTGGGCGCTGGGCAGCGCCTCGGCCTCGCCCGGC
GAGCTGTGCCTGGTGCAGGTCGGGCTTTTGTGGCACCGCTGCCGCGTGGTCAGCCGGCAGGCACAGGAGA
GCCGTGTCTTCCTGCTGGACGAGGGCCGCACCATCACGGCCGGAGCAGGCTCGCTGGCGCCTGGGCGCAG
AGAGTTCTTCAATTTGCCCTCGGAAGTGCTGGGCTGCGTGCTAGCGGGCCTGGTGCCGGCAGGCTGCGGC
GCGGGCTCAGGCGAGCCGCCGCAGCACTGGCCCGCCGACGCCGTGGACTTCCTTAGCAACCTTCAGGGCA
AGGAGGTGCACGGGTGCGTCCTGGACGTGCTGCTGCTCCATCGCCTGGTCCTCCTGGAGGTGCCTGATGT
GTTCCAACAGATGCGGGAGCTGGGCCTGGCTCGGCGGGTGCCCGACAGCCTCTTCCGTTCGCTGCTGGAG
CGCTATCTCACAGCGGCCACTGCTAGCGTGGGCTCCGGGGTCCCGGTTCTCTCGCGAGTCCCGCTCAAGC
AAAAGCAGCCTGGTCTGGATTACTTCTATCCCCAGCTGCAGCTGGGCGTGACGGAGGCCGTGGTCATAAC
CCAAGTGTGCCATCCCCACCGCATTCACTGCCAGCTCCGCAGCGTCTCGCAGGAGATCCACCGCCTCTCC
GAGAGCATGGCCCAGGTATACCGGGGTTCCACGGGGACAGGGGATGAGAACTCTACCAGTGCCACCTGGG
AGGAGAGGGAGGAGAGCCCAGATAAGCCGGGCTCTCCGTGTGCATCCTGTGGCCTGGATGGACATTGGTA
CAGAGCACTGTTGCTTGAGACTTTTCGGCCCCAGCGCTGTGCCCAGGTGCTTCATGTGGACTATGGAAGG
AAGGAGTTAGTGAGTTGCAGCAGCCTTCGGTACTTGCTGCCTGAATATTTTCGAATGCCGGTGGTGACCT
ACCCTTGTGCTTTGTATGGACTCTGGGACGGTGGGAGAGGCTGGTCTCGGTCACAGGTCGGTGACCTGAA
GACACTGATACTAGGCAAGGCAGTGAATGCAAAGATTGAATTTTATTGCTCCTTTGAGCATGTGTATTAT
GTCAGCCTGTATGGAGAAGATGGGATTAATCTGAACCGTGTGTTTGGAGTACAGTCGTGTTGCTTGGCTG
ACCGAGTCCTTCAGAGCCAGGCAACAGAGGAGGAGGAACCAGAAACATCTCAGTCTCAGTCTCCTGCTGA
AGAAGTAGATGAAGAGATTTCACTCCCAGCCTTAAGATCTATCAGGTTAAAGATGAATGCCTTCTACGAT
GCGCAGGTAGAGTTTGTTAAAAATCCTTCTGAGTTTTGGATTAGGTTGAGGAAACACAATGTCACCTTCA
GTAAGCTGATGAGGAGAATGTGTGGTTTCTATTCCTCTGCCAGTAAGCTGGATGGTGTAGTTTTGAAACC
TGAACCTGATGACCTTTGCTGTGTCAAGTGGAAAGAAAATGGTTATTATAGGGCCATAGTCACCAAATTG
GATGACAAGAGTGTGGATGTATTCTTAGTTGACCGAGGCAATTCGGAAAATGTGGACTGGTATGACGTAA
GGATGCTGCTTCCTCAGTTTAGGCAGCTACCAATATTGGCTGTGAAGTGCACCCTGGCTGATATTTGGCC
TTTGGGAAAAACTTGGAGCCAGGAGGCAGTTTCCTTTTTTAAAAAGACTGTGCTCCACAAAGAATTAGTC
ATCCATATTCTTGATAAACAGGATCATCAATATGTTATTGAGATTCTTGACGAATCAAGAACAGGGGAAG
AAAACATTAGTAAGGTAATTGCCCAAGCTGGATATGCCAAGTATCAGGAATTTGAAACAAAGGAAAATAT
CCTGGTAAATGCCCACTCCCCAGGGCATGTTTCAAACCACTTTACTACGGAGAGTAACAAAATACCTTTT
GCCAAGACTGGAGAAGGAGAGCAGAAAGCCAAGAGAGAGAATAAAACCACATCTGTTTCAAAAGCTTTGA
GTGACACAACAGTTGTAACAAATGGTTCAACTGAACTAGTTGTGCAGGAAAAAGTGAAAAGAGCATCTGT
TTATTTTCCTCTTATGCAGAATTGCTTGGAAATTAAGCCAGGCTCCTCTAGTAAAGGAGAGCTGGAAGTT
GGAAGTACAGTAGAAGTCAGAGTGTCTTATGTTGAAAACCCTGGCTATTTCTGGTGTCAGCTGACCAGGA
ACATACAAGGACTTAAAACTCTAATGTCTGATATTCAGTACTATTGCAAAAATACAGCTGCTCCTCACCA
GAGAAACACCCTTGCTTGTTTGGCTAAGCGAACAGTAAACAGACAGTGGTCCAGAGCACTTATTAGTGGG
ATACAGTCTGTGGAGCATGTCAATGTAACATTTGTAGATTATGGAGACAGAGAAATGGTATCTGTGAAGA
ATATTTATTCAATTAGTGAAGAATTTCTGAAGGTTAAGGCACAGGCTTTTAGGTGCAGTCTTTATAATTT
AATTCAACCAGTTGGCCAGAATCCCTTTGTTTGGGATGTAAAGGCAATACAAGCTTTCAATGAATTTATA
GATAATGCATGGCAAAAAAATCTAGAATTAAAATGTACAATATTTGCTCTGGCTTCAATTAATGAAGAAC
TGTTTAACATTGTGGATTTGCTAACCCCCTTTCAGAGTGCATGCCATTTCTTGGTAGAAAAGAGACTTGC
AAGACCAGTAAAACTTCAGAAGCCTTTGGAGTCCTCTGTTCAGCTACATTCCTACTTCTATTCTACACAT
GATATGAAAATTGGAAGTGAAGAATTAGTTTATATAACGCATATTGATGACCCTTGGACATTTTATTGCC
AGCTGGCAAGAAATGCAAATATTTTAGAACAGTTGTCATGTAGTATTACACAATTAAGTAAAGTTTTGCT
GAATTTAAAAACATCTCCCTTGAACCCTGGAACCTTGTGCCTTGCCAAGTATACTGATGGAAACTGGTAT
AGGGGCATAGTAATAGAGAAAGAGCCAAAGAAAGTCTTCTTTGTTGATTTTGGGAATATTTATGTAGTAA
CAAGTGATGATCTGCTTCCAATACCTAGTGATGCATATGATGTCTTACTTTTGCCCATGCAAGCTGTCAG
ATGTTCATTATCTGATATTCCTGATCATATACCAGAAGAAGTGGTGGTGTGGTTTCAGGAGACTATTTTA
GATAAGTCATTGAAGGCTTTAGTTGTAGCAAAAGATCCAGATGGAACACTGATTATAGAACTATATGGTG
ACAATATTCAAATTAGTGCTAGTATTAATAAGAAGTTGGGGCTACTTAGTTACAAAGATAGAATAAGAAA
AAAAGAAAGTGAAGTCCTCTGTTCTACAACTGAAACTCTTGAAGAAAAAAATGAGAATATGAAGTTGCCA
TGTACAGAGTATTTAAGTAAATCAGTAGGGTACAAGTTACCTAATAAAGAAATTTTGGAAGAGTCATATA
AACCTCAGATCAACTCATCATACAAGGAACTCAAACTTTTACAAAGTTTAACAAAAACAAACTTAGTCAC
TCAATATCAAGACTCTGTGGGAAATAAAAATAGTCAAGTGTTTCCATTAACAACAGAAAAGAAAGAAGAA
ATTTCTGCTGAGACACCCTTGAAAACAGCAAGAGTAGAAGCTACTCTTTCAGAGAGAAAAATAGGAGATT
CATGTGACAAAGATTTGCCTCTGAAATTTTGTGAGTTCCCACAGAAGACTATAATGCCTGGATTTAAAAC
AACTGTATATGTTTCTCATATAAATGACCTTTCAGACTTTTATGTTCAACTAATAGAAGATGAAGCTGAA
ATTAGTCATCTTTCAGAGAGATTAAACAGTGTTAAAACAAGGCCCGAATATTATGTAGGTCCACCTTTGC
AAAGAGGAGATATGATATGTGCTGTTTTCCCAGAAGATAATTTATGGTATCGTGCTGTGATCAAGGAGCA
ACAACCCAATGACCTTCTCTCTGTGCAGTTTATAGATTATGGCAATGTTTCTGTGGTTCATACTAACAAA
ATAGGTAGGCTTGACCTTGTTAATGCAATATTGCCGGGGTTGTGCATTCATTGCTCCTTGCAGGGATTTG
AGGTTCCTGACAATAAAAATTCTAAGAAAATGATGCATTACTTTTCCCAACGGACCAGCGAGGCTGCAAT
AAGATGTGAATTTGTTAAATTTCAAGACAGATGGGAAGTTATTCTTGCTGATGAACATGGGATCATAGCA
GATGATATGATTAGCAGGTATGCTCTCAGTGAAAAATCTCAAGTAGAACTTTCTACCCAAGTAATTAAAA
GTGCCAGTTCAAAGTCTGTTAACAAATCAGACATTGACACTTCAGTATTTCTTAACTGGTATAATCCAGA
AAAAAAAATGATAAGAGCTTATGCCACTGTGATAGATGGACCTGAGTACTTTTGGTGTCAGTTTGCTGAT
ACGGAGAAACTTCAGTGTTTAGAAGTAGAAGTACAGACTGCTGGAGAACAGGTAGCAGACAGGAGAAATT
GTATCCCATGTCCTTATATTGGAGATCCTTGTATAGTAAGATACAGAGAAGATGGACATTATTATAGGGC
ACTTATCACTAATATTTGTGAAGATTATCTTGTATCTGTCAGGCTTGTGGACTTTGGAAACATTGAAGAC
TGTGTGGACCCAAAAGCACTCTGGGCCATTCCTTCTGAACTTCTGTCGGTTCCCATGCAAGCCTTTCCAT
GTTGCCTCTCAGGGTTTAACATTTCAGAAGGATTATGTTCTCAAGAGGGAAATGACTATTTCTATGAAAT
AATAACAGAAGATGTGTTGGAAATAACAATACTAGAAATCAGAAGGGATGTTTGTGATATCCCTTTAGCA
ATTGTTGACTTGAAAAGCAAAGGTAAAAGTATTAATGAGAAAATGGAGAAATATTCTAAGACTGGTATTA
AAAGTGCTCTTCCCTATGAAAATATTGACTCAGAGATAAAGCAGACTCTTGGGTCCTACAATCTTGATGT
AGGACTTAAGAAATTAAGTAATAAAGCTGTACAAAATAAAATATATATGGAACAACAGACAGATGAGCTT
GCTGAAATAACTGAAAAAGATGTAAACATTATTGGAACCAAACCAAGTAACTTCCGTGACCCTAAAACTG
ATAACATTTGTGAAGGGTTTGAAAACCCCTGCAAAGATAAAATTGATACTGAGGAACTGGAAGGTGAATT
AGAGTGCCATCTGGTTGACAAAGCAGAGTTTGATGATAAATACCTGATTACAGGATTTAACACATTACTA
CCACATGCTAATGAAACAAAGGAGATACTAGAACTGAATTCACTTGAGGTGCCGCTTTCTCCTGATGATG
AATCAAAAGAATTCTTAGAACTGGAATCTATTGAGTTACAGAATTCTCTGGTGGTGGATGAAGAAAAAGG
GGAGCTAAGCCCGGTGCCACCGAATGTGCCACTCTCCCAAGAGTGTGTCACAAAAGGCGCCATGGAGCTA
TTTACACTGCAGCTTCCTCTCAGCTGTGAAGCTGAGAAACAGCCAGAACTAGAACTACCTACAGCCCAGC
TGCCTTTAGATGACAAGATGGATCCTTTGTCTTTAGGAGTTAGTCAGAAAGCACAGGAATCCATGTGTAC
TGAGGACATGAGAAAGTCAAGTTGTGTAGAATCTTTTGATGACCAGCGCAGGATGTCATTGCATCTACAT
GGAGCAGATTGTGATCCTAAAACACAGAATGAAATGAATATATGTGAAGAAGAATTTGTAGAGTATAAAA
ACAGGGATGCCATTTCGGCATTGATGCCTTTGTTCTCTGAGGAAGAAAGCAGTGATGGAAGCAAGCACAA
TAATGGTTTACCAGATCATATCTCAGCTCAACTACAGAACACCTACACTCTGAAAGCCTTTACTGTTGGA
TCTAAATGTGTTGTGTGGTCAAGTCTAAGAAACACATGGTCTAAATGTGAGATTTTAGAAACAGCTGAAG
AAGGAACAAGGAAAAGGGGTTTGGAGGTGATGGAGATTTAA

Translation (2066 aa):
MCSTPGMPAPGASLALRVSFVDVHPDVIPVQLWGLVGERRGEYLRLSREIQEAAATRGQWALGSASASPG
ELCLVQVGLLWHRCRVVSRQAQESRVFLLDEGRTITAGAGSLAPGRREFFNLPSEVLGCVLAGLVPAGCG
AGSGEPPQHWPADAVDFLSNLQGKEVHGCVLDVLLLHRLVLLEVPDVFQQMRELGLARRVPDSLFRSLLE
RYLTAATASVGSGVPVLSRVPLKQKQPGLDYFYPQLQLGVTEAVVITQVCHPHRIHCQLRSVSQEIHRLS
ESMAQVYRGSTGTGDENSTSATWEEREESPDKPGSPCASCGLDGHWYRALLLETFRPQRCAQVLHVDYGR
KELVSCSSLRYLLPEYFRMPVVTYPCALYGLWDGGRGWSRSQVGDLKTLILGKAVNAKIEFYCSFEHVYY
VSLYGEDGINLNRVFGVQSCCLADRVLQSQATEEEEPETSQSQSPAEEVDEEISLPALRSIRLKMNAFYD
AQVEFVKNPSEFWIRLRKHNVTFSKLMRRMCGFYSSASKLDGVVLKPEPDDLCCVKWKENGYYRAIVTKL
DDKSVDVFLVDRGNSENVDWYDVRMLLPQFRQLPILAVKCTLADIWPLGKTWSQEAVSFFKKTVLHKELV
IHILDKQDHQYVIEILDESRTGEENISKVIAQAGYAKYQEFETKENILVNAHSPGHVSNHFTTESNKIPF
AKTGEGEQKAKRENKTTSVSKALSDTTVVTNGSTELVVQEKVKRASVYFPLMQNCLEIKPGSSSKGELEV
GSTVEVRVSYVENPGYFWCQLTRNIQGLKTLMSDIQYYCKNTAAPHQRNTLACLAKRTVNRQWSRALISG
IQSVEHVNVTFVDYGDREMVSVKNIYSISEEFLKVKAQAFRCSLYNLIQPVGQNPFVWDVKAIQAFNEFI
DNAWQKNLELKCTIFALASINEELFNIVDLLTPFQSACHFLVEKRLARPVKLQKPLESSVQLHSYFYSTH
DMKIGSEELVYITHIDDPWTFYCQLARNANILEQLSCSITQLSKVLLNLKTSPLNPGTLCLAKYTDGNWY
RGIVIEKEPKKVFFVDFGNIYVVTSDDLLPIPSDAYDVLLLPMQAVRCSLSDIPDHIPEEVVVWFQETIL
DKSLKALVVAKDPDGTLIIELYGDNIQISASINKKLGLLSYKDRIRKKESEVLCSTTETLEEKNENMKLP
CTEYLSKSVGYKLPNKEILEESYKPQINSSYKELKLLQSLTKTNLVTQYQDSVGNKNSQVFPLTTEKKEE
ISAETPLKTARVEATLSERKIGDSCDKDLPLKFCEFPQKTIMPGFKTTVYVSHINDLSDFYVQLIEDEAE
ISHLSERLNSVKTRPEYYVGPPLQRGDMICAVFPEDNLWYRAVIKEQQPNDLLSVQFIDYGNVSVVHTNK
IGRLDLVNAILPGLCIHCSLQGFEVPDNKNSKKMMHYFSQRTSEAAIRCEFVKFQDRWEVILADEHGIIA
DDMISRYALSEKSQVELSTQVIKSASSKSVNKSDIDTSVFLNWYNPEKKMIRAYATVIDGPEYFWCQFAD
TEKLQCLEVEVQTAGEQVADRRNCIPCPYIGDPCIVRYREDGHYYRALITNICEDYLVSVRLVDFGNIED
CVDPKALWAIPSELLSVPMQAFPCCLSGFNISEGLCSQEGNDYFYEIITEDVLEITILEIRRDVCDIPLA
IVDLKSKGKSINEKMEKYSKTGIKSALPYENIDSEIKQTLGSYNLDVGLKKLSNKAVQNKIYMEQQTDEL
AEITEKDVNIIGTKPSNFRDPKTDNICEGFENPCKDKIDTEELEGELECHLVDKAEFDDKYLITGFNTLL
PHANETKEILELNSLEVPLSPDDESKEFLELESIELQNSLVVDEEKGELSPVPPNVPLSQECVTKGAMEL
FTLQLPLSCEAEKQPELELPTAQLPLDDKMDPLSLGVSQKAQESMCTEDMRKSSCVESFDDQRRMSLHLH
GADCDPKTQNEMNICEEEFVEYKNRDAISALMPLFSEEESSDGSKHNNGLPDHISAQLQNTYTLKAFTVG
SKCVVWSSLRNTWSKCEILETAEEGTRKRGLEVMEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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