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Report for CCDS10895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10895.1 Public Homo sapiens 16 IL34 24 110 108 CCDS HistoryNCBI Gene:146433Re-query CCDS DB by CCDS ID:10895.1Re-query CCDS DB by GeneID:146433See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10895.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288098.7 ENSP00000288098.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000288098.7Link to Ensembl Protein Viewer:ENSP00000288098.2Re-query CCDS DB by Nucleotide ID:ENST00000288098Re-query CCDS DB by Protein ID:ENSP00000288098
Original member Current member EBI ENST00000429149.6 ENSP00000397863.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429149.6Link to Ensembl Protein Viewer:ENSP00000397863.2Re-query CCDS DB by Nucleotide ID:ENST00000429149Re-query CCDS DB by Protein ID:ENSP00000397863
Original member Current member NCBI NM_001172772.2 NP_001166243.1 Accepted alive Link to Nucleotide Sequence:NM_001172772.2Link to Protein Sequence:NP_001166243.1Re-query CCDS DB by Nucleotide ID:NM_001172772Re-query CCDS DB by Protein ID:NP_001166243Link to BLAST:NP_001166243.1
Original member Current member NCBI NM_001393493.1 NP_001380422.1 Accepted alive Link to Nucleotide Sequence:NM_001393493.1Link to Protein Sequence:NP_001380422.1Re-query CCDS DB by Nucleotide ID:NM_001393493Re-query CCDS DB by Protein ID:NP_001380422Link to BLAST:NP_001380422.1
Original member Current member NCBI NM_001393494.1 NP_001380423.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001393494.1Link to Protein Sequence:NP_001380423.1Re-query CCDS DB by Nucleotide ID:NM_001393494Re-query CCDS DB by Protein ID:NP_001380423Link to BLAST:NP_001380423.1
Original member Current member NCBI NM_152456.3 NP_689669.2 Accepted alive Link to Nucleotide Sequence:NM_152456.3Link to Protein Sequence:NP_689669.2Re-query CCDS DB by Nucleotide ID:NM_152456Re-query CCDS DB by Protein ID:NP_689669Link to BLAST:NP_689669.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166243.1 242 Q6ZMJ4-1 242 100% 0 0
NP_001380422.1 242 Q6ZMJ4-1 242 100% 0 0
NP_001380423.1 242 Q6ZMJ4-1 242 100% 0 0
NP_689669.2 242 Q6ZMJ4-1 242 100% 0 0

Chromosomal Locations for CCDS 10895.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 70646948 70646975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70654538 70654671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70656602 70656679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70656960 70657121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70659618 70659753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70659997 70660187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGCCCCGGGGCTTCACCTGGCTGCGCTATCTTGGGATCTTCCTTGGCGTGGCCTTGGGGAATGAGCCTT
TGGAGATGTGGCCCTTGACGCAGAATGAGGAGTGCACTGTCACGGGTTTTCTGCGGGACAAGCTGCAGTA
CAGGAGCCGACTTCAGTACATGAAACACTACTTCCCCATCAACTACAAGATCAGTGTGCCTTACGAGGGG
GTGTTCAGAATCGCCAACGTCACCAGGCTGCAGAGGGCCCAGGTGAGCGAGCGGGAGCTGCGGTATCTGT
GGGTCTTGGTGAGCCTCAGTGCCACTGAGTCGGTGCAGGACGTGCTGCTCGAGGGCCACCCATCCTGGAA
GTACCTGCAGGAGGTGGAGACGCTGCTGCTGAATGTCCAGCAGGGCCTCACGGATGTGGAGGTCAGCCCC
AAGGTGGAATCCGTGTTGTCCCTCTTGAATGCCCCAGGGCCAAACCTGAAGCTGGTGCGGCCCAAAGCCC
TGCTGGACAACTGCTTCCGGGTCATGGAGCTGCTGTACTGCTCCTGCTGTAAACAAAGCTCCGTCCTAAA
CTGGCAGGACTGTGAGGTGCCAAGTCCTCAGTCTTGCAGCCCAGAGCCCTCATTGCAGTATGCGGCCACC
CAGCTGTACCCTCCGCCCCCGTGGTCCCCCAGCTCCCCGCCTCACTCCACGGGCTCGGTGAGGCCGGTCA
GGGCACAGGGCGAGGGCCTCTTGCCCTGA

Translation (242 aa):
MPRGFTWLRYLGIFLGVALGNEPLEMWPLTQNEECTVTGFLRDKLQYRSRLQYMKHYFPINYKISVPYEG
VFRIANVTRLQRAQVSERELRYLWVLVSLSATESVQDVLLEGHPSWKYLQEVETLLLNVQQGLTDVEVSP
KVESVLSLLNAPGPNLKLVRPKALLDNCFRVMELLYCSCCKQSSVLNWQDCEVPSPQSCSPEPSLQYAAT
QLYPPPPWSPSSPPHSTGSVRPVRAQGEGLLP


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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