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Report for CCDS9699.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9699.2 Public Homo sapiens 14 CDKL1 24 110 108 CCDS HistoryNCBI Gene:8814Re-query CCDS DB by CCDS ID:9699.2Re-query CCDS DB by GeneID:8814See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 9699.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000395834.6 ENSP00000379176.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395834.6Link to Ensembl Protein Viewer:ENSP00000379176.2Re-query CCDS DB by Nucleotide ID:ENST00000395834Re-query CCDS DB by Protein ID:ENSP00000379176
Original member Current member NCBI NM_004196.7 NP_004187.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004196.7Link to Protein Sequence:NP_004187.3Re-query CCDS DB by Nucleotide ID:NM_004196Re-query CCDS DB by Protein ID:NP_004187Link to BLAST:NP_004187.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004187.3 357 Q00532-1 357 100% 0 0

Chromosomal Locations for CCDS 9699.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50330074 50330181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50332262 50332432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50334565 50334621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50338947 50339029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50341032 50341232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50342132 50342222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50344986 50345058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50359028 50359149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50395701 50395868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGAGAAGTATGAAAAAATTGGGAAAATTGGAGAAGGATCCTATGGAGTTGTTTTCAAATGTAGAAACA
GGGACACGGGTCAGATTGTGGCCATCAAGAAGTTTCTGGAATCAGAAGATGACCCTGTCATAAAGAAAAT
TGCCCTTCGGGAAATCCGAATGCTCAAGCAACTCAAGCATCCCAACCTTGTTAACCTCCTGGAAGTCTTC
AGGAGGAAACGGAGGCTTCACCTGGTGTTTGAATATTGTGACCACACAGTTCTCCATGAGTTGGACAGAT
ACCAAAGAGGGGTACCAGAACATCTCGTGAAGAGCATAACTTGGCAGACACTGCAAGCTGTAAATTTTTG
CCATAAACACAATTGCATACATAGAGACGTGAAGCCAGAAAATATCCTCATCACGAAACATTCCGTGATT
AAGCTTTGTGACTTTGGATTTGCTCGGCTTTTGACTGGACCGAGTGACTACTATACAGACTACGTGGCTA
CCAGGTGGTACCGCTCCCCTGAGCTGCTGGTGGGGGACACGCAGTACGGCCCCCCGGTGGATGTTTGGGC
AATTGGCTGTGTCTTTGCTGAGCTGCTGTCAGGAGTGCCTCTGTGGCCAGGAAAATCGGATGTGGATCAG
CTGTATCTGATTAGGAAGACCTTGGGGGATCTCATTCCTAGGCACCAGCAAGTGTTTAGCACGAATCAGT
ACTTCAGTGGAGTGAAAATTCCAGACCCTGAAGATATGGAACCACTTGAATTAAAATTCCCAAACATCTC
TTATCCTGCCCTGGGGCTCCTAAAGGGCTGTCTCCACATGGACCCTACTCAAAGGCTGACATGTGAACAG
CTGTTGCATCACCCATATTTTGAAAACATCAGAGAAATAGAGGATTTGGCAAAAGAACACAACAAACCAA
CAAGGAAGACCCTAAGAAAGAGCCGAAAGCACCACTGCTTTACAGAAACATCCAAGTTGCAGTACCTACC
CCAGCTAACTGGCAGCAGCATCCTTCCAGCTTTGGATAATAAGAAGTACTACTGTGATACCAAGAAACTT
AACTACCGTTTTCCAAACATTTAA

Translation (357 aa):
MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVF
RRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVI
KLCDFGFARLLTGPSDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQ
LYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTQRLTCEQ
LLHHPYFENIREIEDLAKEHNKPTRKTLRKSRKHHCFTETSKLQYLPQLTGSSILPALDNKKYYCDTKKL
NYRFPNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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