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Report for CCDS14086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14086.1 Public Homo sapiens 22 TRABD 24 110 108 CCDS HistoryNCBI Gene:80305Re-query CCDS DB by CCDS ID:14086.1Re-query CCDS DB by GeneID:80305See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14086.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303434.8 ENSP00000305664.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303434.8Link to Ensembl Protein Viewer:ENSP00000305664.4Re-query CCDS DB by Nucleotide ID:ENST00000303434Re-query CCDS DB by Protein ID:ENSP00000305664
Original member Current member EBI ENST00000380909.9 ENSP00000370295.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380909.9Link to Ensembl Protein Viewer:ENSP00000370295.4Re-query CCDS DB by Nucleotide ID:ENST00000380909Re-query CCDS DB by Protein ID:ENSP00000370295
Original member Current member EBI ENST00000395827.5 ENSP00000379171.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395827.5Link to Ensembl Protein Viewer:ENSP00000379171.1Re-query CCDS DB by Nucleotide ID:ENST00000395827Re-query CCDS DB by Protein ID:ENSP00000379171
Original member Current member NCBI NM_001320485.2 NP_001307414.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320485.2Link to Protein Sequence:NP_001307414.1Re-query CCDS DB by Nucleotide ID:NM_001320485Re-query CCDS DB by Protein ID:NP_001307414Link to BLAST:NP_001307414.1
Original member Current member NCBI NM_001320487.2 NP_001307416.1 Accepted alive Link to Nucleotide Sequence:NM_001320487.2Link to Protein Sequence:NP_001307416.1Re-query CCDS DB by Nucleotide ID:NM_001320487Re-query CCDS DB by Protein ID:NP_001307416Link to BLAST:NP_001307416.1
Original member Current member NCBI NM_001378762.1 NP_001365691.1 Accepted alive Link to Nucleotide Sequence:NM_001378762.1Link to Protein Sequence:NP_001365691.1Re-query CCDS DB by Nucleotide ID:NM_001378762Re-query CCDS DB by Protein ID:NP_001365691Link to BLAST:NP_001365691.1
Original member Current member NCBI NM_025204.4 NP_079480.2 Accepted alive Link to Nucleotide Sequence:NM_025204.4Link to Protein Sequence:NP_079480.2Re-query CCDS DB by Nucleotide ID:NM_025204Re-query CCDS DB by Protein ID:NP_079480Link to BLAST:NP_079480.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307414.1 376 Q9H4I3-1 376 100% 0 0
NP_001307416.1 376 Q9H4I3-1 376 100% 0 0
NP_001365691.1 376 Q9H4I3-1 376 100% 0 0
NP_079480.2 376 Q9H4I3-1 376 100% 0 0

Chromosomal Locations for CCDS 14086.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 50193061 50193093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50193576 50193654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50194340 50194506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50194900 50195040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50197241 50197351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50197449 50197588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50197823 50197995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50198075 50198186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 50198345 50198519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGACGGGGAGGAGCAGCAGCCACCGCACGAGGCCAACGTGGAACCTGTTGTGCCGTCAGAGGCTTCAG
AGCCGGTGCCCAGGGTGCTTTCTGGAGACCCCCAGAACCTGTCCGACGTGGACGCCTTCAACCTGCTCCT
GGAGATGAAGCTGAAGCGGCGGCGTCAGCGGCCCAACCTGCCGCGCACTGTGACCCAGTTGGTGGCTGAG
GACGGGAGCAGGGTGTACGTGGTGGGGACAGCCCACTTCAGCGACGACAGCAAGAGGGACGTTGTGAAGA
CCATCCGGGAGGTGCAGCCTGACGTGGTGGTCGTGGAGCTCTGCCAATATCGTGTGTCCATGCTGAAGAT
GGACGAGAGCACGCTGCTGCGGGAGGCCCAGGAGCTCAGCCTGGAGAAGCTGCAGCAGGCCGTGAGGCAG
AACGGGCTCATGTCGGGGCTGATGCAGATGCTGCTGCTGAAGGTGTCTGCACACATCACCGAGCAGCTGG
GCATGGCCCCAGGTGGCGAGTTCAGGGAGGCCTTCAAGGAGGCCAGCAAGGTGCCTTTCTGCAAGTTCCA
CCTGGGTGACCGACCCATCCCCGTCACCTTCAAGAGGGCCATCGCAGCGCTCTCCTTCTGGCAGAAGGTC
AGGCTGGCTTGGGGCCTGTGCTTCCTGTCAGACCCCATCAGCAAGGATGACGTGGAACGCTGCAAGCAGA
AGGACCTACTGGAGCAGATGATGGCCGAGATGATTGGCGAGTTCCCAGACCTGCACCGCACCATCGTCTC
GGAGCGCGACGTCTACCTAACCTACATGCTGCGCCAGGCCGCGCGGCGCCTCGAGCTGCCTCGGGCCTCT
GACGCCGAGCCCAGGAAGTGCGTCCCCTCCGTGGTCGTGGGCGTCGTGGGCATGGGCCACGTGCCTGGCA
TCGAGAAGAACTGGAGCACCGACCTCAACATCCAGGAGATCATGACCGTGCCCCCGCCGTCCGTCTCCGG
CAGAGTGTCTCGGTTGGCCGTGAAGGCCGCCTTCTTCGGCCTGCTGGGCTACAGCCTGTACTGGATGGGC
CGCCGCACCGCGAGCCTGGTCCTGTCGCTGCCCGCCGCGCAGTACTGCCTGCAGAGGGTGACCGAGGCCC
GGCACAAGTAG

Translation (376 aa):
MDGEEQQPPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVTQLVAE
DGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQ
NGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKV
RLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRAS
DAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMG
RRTASLVLSLPAAQYCLQRVTEARHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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